Pinned Repositories
cellxgene-docs
Documentation for cellxgene
chunkedimage
A Zarr-based library that supports almost-SpaceTx-Format
cromwell-manager
python tools for interaction with cromwell servers
data-consumer-vignettes
Simple walk-throughs of interacting with the DCP as a downstream data consumer.
dcp-community
HCA Data Coordination Platform community content
meridian
A schema and collection of wrangling reports for single cell datasets from assorted archives
Rut
Resampled U-Test for non-parametric comparison of two or more distributions with unequal sampling and variance
scsequtil
Utilities for large scale single cell data processing
seqc
Single-Cell Sequencing Quality Control and Processing Software
starfish
starfish: unified pipelines for image-based transcriptomics
ambrosejcarr's Repositories
ambrosejcarr/seqc
Single-Cell Sequencing Quality Control and Processing Software
ambrosejcarr/cromwell-manager
python tools for interaction with cromwell servers
ambrosejcarr/meridian
A schema and collection of wrangling reports for single cell datasets from assorted archives
ambrosejcarr/Rut
Resampled U-Test for non-parametric comparison of two or more distributions with unequal sampling and variance
ambrosejcarr/scsequtil
Utilities for large scale single cell data processing
ambrosejcarr/cellxgene-docs
Documentation for cellxgene
ambrosejcarr/chunkedimage
A Zarr-based library that supports almost-SpaceTx-Format
ambrosejcarr/data-consumer-vignettes
Simple walk-throughs of interacting with the DCP as a downstream data consumer.
ambrosejcarr/dcp-community
HCA Data Coordination Platform community content
ambrosejcarr/dissertation
Ambrose Carr's Dissertation
ambrosejcarr/h5
Simple wrapper around pandas hdf5 method to allow safe usage
ambrosejcarr/matrix-api
ambrosejcarr/matrix-service
DCP Expression Matrix Service
ambrosejcarr/notebooks
ambrosejcarr/patchseq_human_L23
Code for reproducing the analyses presented in "Human cortical expansion involves diversification and specialization of supragranular intratelencephalic-projecting neurons".
ambrosejcarr/pysmFISH
Analysis of smFISH data
ambrosejcarr/scikit-image
Image processing in Python
ambrosejcarr/scratch
ambrosejcarr/simpleseq
Simple tools for processing single-cell sequencing data
ambrosejcarr/skylab
Secondary analysis pipelines
ambrosejcarr/wdl_parser
Parser for WDL files
ambrosejcarr/zarr
An implementation of chunked, compressed, N-dimensional arrays for Python.
ambrosejcarr/zeisel_hca
Dirty scripts to process Zeisel et al. data for HCA Jamboree