Pinned Repositories
clip-viz
clipplotr
clipplotr is a self-contained command-line tool written in R to facilitate comparative visualisation of CLIP data
clipseq
CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.
comp-hiclip
tosca
Nextflow analysis pipeline for hiCLIP and proximity ligation sequencing data
toscatools
R package of functions for RNA proximity ligation analysis used by Tosca
crispr-indels
clipseq
CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.
clipplotr
A tool to facilitate comparative visualisation of CLIP data
tdp43-mutants
Repository for "TDP-43 condensation properties specify its RNA binding and regulatory repertoire"
amchakra's Repositories
amchakra/tosca
Nextflow analysis pipeline for hiCLIP and proximity ligation sequencing data
amchakra/clip-viz
amchakra/toscatools
R package of functions for RNA proximity ligation analysis used by Tosca
amchakra/clipplotr
clipplotr is a self-contained command-line tool written in R to facilitate comparative visualisation of CLIP data
amchakra/clipseq
CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.
amchakra/comp-hiclip
amchakra/crispr-indels
amchakra/linux-cheat-sheet
amchakra/riboseq-flow
A Nextflow DSL2 pipeline to perform ribo-seq data analysis and comprehensive quality control.