Luscombe Lab
Computational biology laboratory interested in genome-scale analysis of transcriptional regulation and evolution.
London/Okinawa
Pinned Repositories
arshamg-scrnaseq-wgan
Wasserstein Generative Adversarial Network for analysing scRNAseq data
clipseq
Nextflow CLIP analysis pipeline
cutandrun
luslab-nf-modules
Luslab nextflow modules
luslab.github.io
Main documentation and "play-book" for the London Luslab
MLehealth
Machine learning on electronic health records
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
nf-core-modules
Nextflow DSL2 public module repository for luslab maintained nextflow code
nf-core-test-data
Test data repository for luslab/nf-core-modules
oz-bulk-rnaseq
Notes on analysing RNAseq, focusing on alternative splicing & polyadenylation.
Luscombe Lab's Repositories
luslab/luslab-nf-modules
Luslab nextflow modules
luslab/oz-bulk-rnaseq
Notes on analysing RNAseq, focusing on alternative splicing & polyadenylation.
luslab/briscoe-nf-tobias
Nextflow wrapper for the tobias analysis tool
luslab/luslab-nf-sra-download
luslab/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
luslab/oist-assembler
OIST long read assembler
luslab/cheshic-2021-neurips
luslab/cutandrun
luslab/IntergenicTranscription
Repository of codes used in the Intergenic transcription manuscript
luslab/luslab.github.io
Main documentation and "play-book" for the London Luslab
luslab/nf-core-modules
Nextflow DSL2 public module repository for luslab maintained nextflow code
luslab/nf-core-test-data
Test data repository for luslab/nf-core-modules
luslab/2020-nov-hackathon-spaceutil
luslab/ahr-tead-motif-analysis
Analysis for "Cell-intrinsic Aryl Hydrocarbon Receptor signalling is required for the resolution of injury-induced colonic stem cells"
luslab/cheshic-2022-skin-atlas
luslab/cheshic-ucsc-host
luslab/chromap
Fast alignment and preprocessing of chromatin profiles
luslab/comp-hiclip
luslab/denovohybrid
UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads
luslab/distiller-nf
a modular Hi-C mapping pipeline
luslab/folderstats
Python module that creates statistics from a folder structure
luslab/luslab-nf-test-dataset-generator
luslab/multi-package-containers
Testing building mulled containers for multi-requirement tools.
luslab/nf-core-denovohybrid
A pipeline for assembling and annotating eukaryote genomes using long and short sequencing reads.
luslab/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
luslab/spacemap-peptide-analysis
Data analysis for the SPACEmap experiment
luslab/spatial-space-kidney
luslab/test-datasets
Test data to be used for automated testing with the nf-core pipelines
luslab/test-upstream
luslab/tools
Python package with helper tools for the nf-core community.