Luscombe Lab
Computational biology laboratory interested in genome-scale analysis of transcriptional regulation and evolution.
London/Okinawa
Pinned Repositories
arshamg-scrnaseq-wgan
Wasserstein Generative Adversarial Network for analysing scRNAseq data
clipseq
Nextflow CLIP analysis pipeline
cutandrun
luslab-nf-modules
Luslab nextflow modules
luslab.github.io
Main documentation and "play-book" for the London Luslab
MLehealth
Machine learning on electronic health records
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
nf-core-modules
Nextflow DSL2 public module repository for luslab maintained nextflow code
nf-core-test-data
Test data repository for luslab/nf-core-modules
oz-bulk-rnaseq
Notes on analysing RNAseq, focusing on alternative splicing & polyadenylation.
Luscombe Lab's Repositories
luslab/arshamg-scrnaseq-wgan
Wasserstein Generative Adversarial Network for analysing scRNAseq data
luslab/MLehealth
Machine learning on electronic health records
luslab/ChIP-seq-pipeline
luslab/nf-clip
Repo for the CLIP nextflow analysis pipeline
luslab/crispr-indels
luslab/hiclipr
hiCLIP data analysis package
luslab/multiregion-cnv-phylogenetics
This respository details the analysis associated with the publication 'Intra-Tumor Genetic Heterogeneity in Wilms Tumor: Clonal Evolution and Clinical Implications'.
luslab/blutwuRst
ATAC-seq analysis functions
luslab/NeuralATACseq
Analysis scripts for Metzis et. al. (2018)
luslab/psiclip
Scripts to reproduce the pre-processing and figures from "PsiCLIP reveals the arrangement of DEAH-box helicases before and after exon ligation"
luslab/ChromWave
luslab/chromWaveR
R package to predict nucleosome(/TF) occupancy from DNA sequence using pre-trained chromWave models.
luslab/clipseq
Nextflow CLIP analysis pipeline
luslab/nf-cut-tag
luslab/hyperas
Keras + Hyperopt: A very simple wrapper for convenient hyperparameter optimization
luslab/hyperopt
Distributed Asynchronous Hyperparameter Optimization in Python
luslab/KCL_RNA-seq_course_RStudio
luslab/oz-hpc-camp-notes
Notes on how to use the CAMP High Performance Cluster at Crick
luslab/oz-scrnaseq
Comprehensive notes on the steps in single cell RNAseq.
luslab/vscode-language-nextflow
Nextflow language support for Visual Studio Editor