Pinned Repositories
01-image-basics
amithjkamath.github.io
astra
Atomic Surface Transformations for Radiotherapy quality Assurance
awesome-ai-in-radiation-oncology
codesamples
general code samples in C++, python and MATLAB.
context_vs_fbr
This repository supports our recent MedNeurIPS 2022 abstract on the importance of context versus foreground-to-background ratio in segmentation tasks.
deepdosesens
How Sensitive Are Deep Learning Based Radiotherapy Dose Prediction Models To Variability In Organs At Risk Segmentation?
imageViewer
this is a simple image viewer based on QT 4.8 It is an extension of the tutorial at http://qt-project.org/doc/qt-4.8/widgets-imageviewer.html
pyradise
Python-based Radiotherapy Dicom Segmentation library (PyRaDiSE)
bender
This repository supports the BENDER series of videos for the MICCAI Education Challenge, 2022.
amithjkamath's Repositories
amithjkamath/deepdosesens
How Sensitive Are Deep Learning Based Radiotherapy Dose Prediction Models To Variability In Organs At Risk Segmentation?
amithjkamath/imageViewer
this is a simple image viewer based on QT 4.8 It is an extension of the tutorial at http://qt-project.org/doc/qt-4.8/widgets-imageviewer.html
amithjkamath/astra
Atomic Surface Transformations for Radiotherapy quality Assurance
amithjkamath/codesamples
general code samples in C++, python and MATLAB.
amithjkamath/context_vs_fbr
This repository supports our recent MedNeurIPS 2022 abstract on the importance of context versus foreground-to-background ratio in segmentation tasks.
amithjkamath/pyradise
Python-based Radiotherapy Dicom Segmentation library (PyRaDiSE)
amithjkamath/01-image-basics
amithjkamath/amithjkamath.github.io
amithjkamath/bme-labs
Repository for materials related to the biomedical engineering lab
amithjkamath/CSAODFcode
MATLAB implementation of the CSA ODF Algorithm. More at: http://conservancy.umn.edu/handle/11299/140183
amithjkamath/doselo
DOSELO (Dose Segmentation Loss Function): Dose Guidance for Radiotherapy-oriented Deep Learning Segmentation
amithjkamath/fastbook
The fastai book, published as Jupyter Notebooks
amithjkamath/gpssi
Implementation of the GPSSI paper
amithjkamath/image-registration
This is a demonstration of how transformation matrices affect registration for the rigid case.
amithjkamath/imclass
A simple image object framework to read and write image files.
amithjkamath/MIALab
Medical Image Analysis Lab (MIALab), University of Bern
amithjkamath/miccaihackathon_shifts
amithjkamath/ml-design-patterns
Source code accompanying O'Reilly book: Machine Learning Design Patterns
amithjkamath/montyhall
This is an interactive Monty Hall problem demonstration with a MATLAB UI.
amithjkamath/nnUNet
amithjkamath/open-kbp
Develop dose prediction models for knowledge-based planning in radiotherapy
amithjkamath/opencv
Open Source Computer Vision Library
amithjkamath/PHiSeg-code
Tensorflow Code for "PHiSeg: Capturing Uncertainty in Medical Image Segmentation", Proc. MICCAI 2019
amithjkamath/PortPy
Opensource radiation treatment planning system in Python
amithjkamath/segment-anything
The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.
amithjkamath/segmentation-evaluator
amithjkamath/stochastic_segmentation_networks
Stochastic Segmentation Networks
amithjkamath/surface-distance
Library to compute surface distance based performance metrics for segmentation tasks.
amithjkamath/template-matching
This is a simple streamlit + OpenCV demonstration of template matching.