Pinned Repositories
battenberg_editted
Battenberg R package for subclonal copynumber estimation
GitTrainingAM
SMaSH
A tool for sample swap identification in high throughput sequencing studies
vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
maftools
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
dpclust
Dirichlet Process based methods for subclonal reconstruction of tumours
amootta's Repositories
amootta/battenberg_editted
Battenberg R package for subclonal copynumber estimation
amootta/GitTrainingAM
amootta/SMaSH
A tool for sample swap identification in high throughput sequencing studies
amootta/vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms