Pinned Repositories
AlphaFold3
Open source implementation of AlphaFold3
biopandas
Working with molecular structures in pandas DataFrames
chatsense
Android messaging app that performs audial emotion analysis.
cheap-proteins
Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http://bit.ly/cheap-proteins
CPCProt
Parameter-efficient embeddings for proteins, pretrained using a contrastive loss.
evo
Mono-repo for protein utilities.
msa-transformer-jax
plaid
Multimodal generation of protein sequence and all-atom structure using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins
progen-speculative-decoding
Official release of the ProGen models
HurtfulWords
Quantifying biases in BERT embeddings pretrained on MIMIC-III clinical notes
amyxlu's Repositories
amyxlu/cheap-proteins
Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http://bit.ly/cheap-proteins
amyxlu/CPCProt
Parameter-efficient embeddings for proteins, pretrained using a contrastive loss.
amyxlu/evo
Mono-repo for protein utilities.
amyxlu/AlphaFold3
Open source implementation of AlphaFold3
amyxlu/biopandas
Working with molecular structures in pandas DataFrames
amyxlu/chatsense
Android messaging app that performs audial emotion analysis.
amyxlu/Create-LMDB-from-Numpy
amyxlu/design-baselines
Baselines for Model-Based Optimization
amyxlu/design-bench
Benchmarks for Model-Based Optimization
amyxlu/dotfiles
amyxlu/openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
amyxlu/paired_cell_inpainting
Self-supervised learning for microscopy images
amyxlu/progen-speculative-decoding
Official release of the ProGen models
amyxlu/ProteinMPNN
Code for the ProteinMPNN paper
amyxlu/protpardelle
Diffusion-based all-atom protein generative model.
amyxlu/transformers
🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.