Pinned Repositories
andreasprlic.github.io
andreasprlic.github.io_old
anyvar
[in development] Proof-of-Concept variation translation, validation, and registration service
karyotypeSVG
A javascript library to generate SVG based ideograms of chromosomes showing cytogenetic bands
proteinfeatureview
The Protein Feature View - a SVG library for visualising protein annotations
sisyphus
An archive of data for the legacy Sisyphus project
spice-3d
A legacy repository of the SPICE DAS client http://www.ncbi.nlm.nih.gov/pubmed/16204122
uniprot-or-mapping
An object relational mapping of UniProt XML files to Java classes and databases using Hibernate.
uta
Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image
andreasprlic's Repositories
andreasprlic/proteinfeatureview
The Protein Feature View - a SVG library for visualising protein annotations
andreasprlic/karyotypeSVG
A javascript library to generate SVG based ideograms of chromosomes showing cytogenetic bands
andreasprlic/spice-3d
A legacy repository of the SPICE DAS client http://www.ncbi.nlm.nih.gov/pubmed/16204122
andreasprlic/uniprot-or-mapping
An object relational mapping of UniProt XML files to Java classes and databases using Hibernate.
andreasprlic/andreasprlic.github.io
andreasprlic/sisyphus
An archive of data for the legacy Sisyphus project
andreasprlic/uta
Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image
andreasprlic/andreasprlic.github.io_old
andreasprlic/anyvar
[in development] Proof-of-Concept variation translation, validation, and registration service
andreasprlic/biocommons.seqrepo
non-redundant, compressed, journalled, file-based storage for biological sequences
andreasprlic/biojava
BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of the biojava project is to facilitate rapid application development for bioinformatics.
andreasprlic/biojava-http
HTML/JS based user interfaces for BioJava
andreasprlic/biojava-spark
:collision: Algorithms that are built around BioJava and run on Apache Spark
andreasprlic/biojava3-tutorial
A tutorial for BioJava 3
andreasprlic/bioutils
bioutils provides some common tools and lookup tables used primarly by the hgvs and uta packages
andreasprlic/eutils
simplified searching, fetching, and parsing records from NCBI using their E-utilities interface
andreasprlic/hgvs
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
andreasprlic/Kaviar_Mapping
andreasprlic/logo
A repository to host the competition for a new BioJava log
andreasprlic/mediawiki_to_git_md
Convert a MediaWiki export XML file into MarkDown as a series of git commits
andreasprlic/mirrors-ncbi
andreasprlic/mmtf-java
The java implementation of the MMTF API, decoder and encoder.
andreasprlic/mmtf-spark
A module to hold Spark examples and functions for the MMTF project
andreasprlic/ngl
WebGL protein viewer
andreasprlic/Protein-Project
andreasprlic/QuickStructureSearch
Methods for fast structural database searches and clustering
andreasprlic/rcsb-viewers
Biojava based RCSB Viewers
andreasprlic/SnpsInPdb
supplemental material for a manuscript that is under review
andreasprlic/spark
Mirror of Apache Spark
andreasprlic/vrs-python
GA4GH Variation Representation Python Implementation