Pinned Repositories
bayesbio
Helper functions for bioinformatics and Bayesian statistics.
bestbooks
the best books of all time website
brain_gene_expression
Brain gene expression data visualization in a Shiny app
BRETIGEA
Brain Cell Type Specific Gene Expression Analysis
chemopreservation
Facts, links and other resources related to chemical ultrastructural preservation, with an emphasis on low/zero maintainance and impaired perfusion. Please have a look at the wiki.
demedify
Demystify medical terms by expanding acronyms and clarifying jargon.
DGCA
Differential Gene Correlation Analysis
dgca_manuscript
evoDnDs
Package that includes the ability to query biomaRt and ensembl to find the dn/ds values for a character vector of gene names.
R-plots
learning R, mostly
andymckenzie's Repositories
andymckenzie/DGCA
Differential Gene Correlation Analysis
andymckenzie/BRETIGEA
Brain Cell Type Specific Gene Expression Analysis
andymckenzie/dgca_manuscript
andymckenzie/demedify
Demystify medical terms by expanding acronyms and clarifying jargon.
andymckenzie/R-plots
learning R, mostly
andymckenzie/bayesbio
Helper functions for bioinformatics and Bayesian statistics.
andymckenzie/brain_gene_expression
Brain gene expression data visualization in a Shiny app
andymckenzie/chemopreservation
Facts, links and other resources related to chemical ultrastructural preservation, with an emphasis on low/zero maintainance and impaired perfusion. Please have a look at the wiki.
andymckenzie/andymckenzie.github.io
andymckenzie/annotables
R data package for annotating/converting Gene IDs
andymckenzie/Cryopreservation_Review
andymckenzie/deep_histopathology_manuscript
andymckenzie/devtools
Tools to make an R developer's life easier
andymckenzie/docker-neuron
docker containers for NEURON simulator
andymckenzie/docker-stylegan2-ada
My Docker image for running Stylegan2 ADA with GPU
andymckenzie/dotfiles
andymckenzie/Fluid_Preservation
andymckenzie/HBPF_Review
andymckenzie/histo
Sandbox for histology analysis
andymckenzie/medical_abbreviations
andymckenzie/metabf
R package to perform Bayesian meta analysis on GWAS summary statistics
andymckenzie/mri2fem
mri2fem
andymckenzie/nrn_docker
andymckenzie/Postmortem_Interval
andymckenzie/psychosis_ddx
andymckenzie/py-wsi
Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch sampling and storing using OpenSlide. Patches may be stored in LMDB, HDF5 files, or to disk. It is highly recommended to fork and download this repository so that personal customisations can be made for your work.
andymckenzie/pythondockertest
andymckenzie/RNAseq-Downstream
andymckenzie/rosalind
scripts inspired by http://rosalind.info/problems/locations/
andymckenzie/wsireg
multimodal whole slide image registration in a graph structure