Pinned Repositories
cfdr
Implements conditional false-discovery rate hypothesis testing, used to perform high-dimensional hypothesis tests. Requires a set of summary statistics in an experiment of interest, and 'levers' on a second set of summary statistics at the same variables for a second experiment. Enables frequentist hypothesis testing with overall strong control of false-discovery rate. Can use several estimators of the cFDR function.
corrcoverage
Repo for corrcoverage package
covr
Test coverage reports for R
credsets_check
Simulation and plot code to check miscalibration
fcfdr
R package for flexible cFDR (fcfdr)
fcfdr_manuscript
Repo to reproduce results from flexible cFDR manuscript
fm-functional
FM_examples
Examples of using corrcoverage for fine-mapping
genomewide-GoShifter
Code to implement an extension of the GoShifter methodology so that it can be performed on all SNPs genome-wide (rather than index SNPs + LD friends as in the original method)
PhD
Weekly summaries for my PhD
annahutch's Repositories
annahutch/corrcoverage
Repo for corrcoverage package
annahutch/fcfdr
R package for flexible cFDR (fcfdr)
annahutch/fm-functional
annahutch/cfdr
Implements conditional false-discovery rate hypothesis testing, used to perform high-dimensional hypothesis tests. Requires a set of summary statistics in an experiment of interest, and 'levers' on a second set of summary statistics at the same variables for a second experiment. Enables frequentist hypothesis testing with overall strong control of false-discovery rate. Can use several estimators of the cFDR function.
annahutch/covr
Test coverage reports for R
annahutch/credsets_check
Simulation and plot code to check miscalibration
annahutch/fcfdr_manuscript
Repo to reproduce results from flexible cFDR manuscript
annahutch/FM_examples
Examples of using corrcoverage for fine-mapping
annahutch/genomewide-GoShifter
Code to implement an extension of the GoShifter methodology so that it can be performed on all SNPs genome-wide (rather than index SNPs + LD friends as in the original method)
annahutch/PhD
Weekly summaries for my PhD
annahutch/simGWAS
Simulating the expected output from a GWAS with a given causal model.
annahutch/singleCVfinemappingfromSuSiE
Code to perform single CV fine-mapping with corrected coverage adjustment for regions with evidence of a single CV from SuSiE
annahutch/T1D-ACR
annahutch/T1D-GWAS
Repository for T1D GWAS project
annahutch/thesis-things
Additional items relating to my thesis that don't appear in the appendix (e.g. because they are html files)