Credible Sets (1st Year PhD) 2018: Intro1 Intro2 16 Oct 2018 26 Oct 2018 1 Nov 2018 13 Nov 2018 20 Nov 2018 30 Nov 2018 7 Dec 2018 8 Dec 2018 2019: Frequentist vrs Bayesian genetic association testing Deriving PPs 16 Jan 2019 23 Jan 2019 12 Feb 2019 20 Feb 2019 27 Feb 2019 6 March 2019 13 March 2019 20 March 2019 27 March 2019 3 April 2019 17 April 2019 8 May 2019 SuSiE notes and implementation 26 June 2019 3 July 2019 15 July 2019 24 July 2019 Some notes before identifying the problems with my code 31 July 2019 14 August 2019 Final checks Prior re-weighting (brief revisit to fine-mapping) 28 Aug 2019 11 Sept 2019 16 Sept 2019 2 Oct 2019 Functional genomics (2nd year PhD) Basics eQTLs, ASE and colocalisation GWAS to function Chromatin conformation Peaky+ 10 Oct 2019 17 Oct 2019 Return to functional genomics How do Cohesin and CTCF Fold DNA in Mammalian Genomes Technologies to study spatial genome organisation 31 Oct 2019 14 Nov 2019 Quantile Regression 5 Dec 2019 12 Dec 2019 19 Dec 2019 Genomic control End of 2019 summary cfdr method for functional annotations 9th Jan 2020 17th Jan 2020 24th Jan 2020 30th Jan 2020 6th Feb 2020 12th Feb 2020 5th March 2020 12th March 2020 19th March 2020 26th March 2020 2nd April 2020 9nd April 2020 17th April 2020 24th April 2020 30th April 2020 7th May 2020 14th May 2020 21st May 2020 28th May 2020 2nd June 2020 11th June 2020 18th June 2020 25th June 2020 2nd July 2020 9th July 2020 16th July 2020 23rd July 2020 30th July 2020 6th August 2020 13th August 2020 20th August 2020 3rd September 2020 10th September 2020 8th October 2020 12th November 2020 18th November 2020 26th November 2020 3rd December 2020 14th Jan 2021 21st Jan 2021 28th Jan 2021 11th Feb 2021 18th Feb 2021 25th Feb 2021 4th March 2021 8th April 2021 6th May 2021 17th June 2021 1st July 2021 Existing methods: Summary LD Score Regression fgwas GREGOR GoShifter CHEERS GARFIELD PAINTOR Extra reading: Knockoffs