annavpo
PhD fellow @Papatheodorou-Group at EMBL-EBI and Cambridge University Interested in developing tools to understand composition in cancer tissues.
EMBL-EBICambridge
Pinned Repositories
annavpo.github.io
CATD_snakemake
Snakemake pipeline for benchmarking cell-type deconvolution methods as well as deconvoluting real bulk RNA-seq data with the use of scRNA-seq datasets
migration
Config files for my GitHub profile.
scverse-tutorials
Tutorials for learning scverse
CATD
CATD: Critical Assessment of Transcriptomics Deconvolution
scRNA-seq_python_course_2024
Course materials for EBI course scRNA-seq analysis in Python, 2024
scrnaseq_python_2023
Materials for the EBI course "Single-cell RNA-seq analysis using Python 2023"
CATD_reproducibility
Notebooks and scripts for reproducing CATD paper
CATD_snakemake
Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq datasets
scverse-tutorials
Tutorials for learning scverse
annavpo's Repositories
annavpo/annavpo.github.io
annavpo/CATD_snakemake
Snakemake pipeline for benchmarking cell-type deconvolution methods as well as deconvoluting real bulk RNA-seq data with the use of scRNA-seq datasets
annavpo/migration
Config files for my GitHub profile.
annavpo/scverse-tutorials
Tutorials for learning scverse