anne-urai
Assistant Professor at Leiden University, former postdoc with @churchlandlab & @int-brain-lab
Leiden, The Netherlands
Pinned Repositories
2017_Urai_pupil-uncertainty
Urai AE, Braun A, Donner TH. (2017) Pupil-linked arousal is driven by decision uncertainty and alters serial choice bias. Nature Communications 8:14637.
2018_BergtUrai_pupil-memory
Bergt A, Urai AE, Donner TH, Schwabe L (2018) Reading memory formation from the eyes. European Journal of Neuroscience
2019_Urai_choice-history-ddm
Urai AE, de Gee JW, Tsetsos K, Donner TH (2019) Choice history biases subsequent evidence accumulation. eLife
2022_Urai_choicehistory_MEG
Urai & Donner (2022). Persistent Activity in Human Parietal Cortex Mediates Perceptual Choice Repetition Bias
lab_wiki
This is the lab wiki. For more info about our team, research, blog and publications see https://anneurai.net.
largescale_recordings
Urai AE, Doiron B, Leifer AM & Churchland AK (2022) Large-scale neural recordings call for new insights to link brain and behavior. Nature Neuroscience
motion_energy_filtering
Urai AE & Wimmer K (2016). Spatiotemporal motion energy filtering: a Matlab implementation.
pupil_preprocessing_tutorial
Preprocess EyeLink pupillometry data using the FieldTrip toolbox
Tools
all kinds of random code tools
citricAcid
Urai AE, Aguillon-Rodriguez V, Laranjeira IC, Cazettes F, The International Brain Laboratory, Mainen ZF & Churchland AK (2021) Citric Acid water as an alternative to water restriction for high-yield mouse behavior. eNeuro, 8(1). doi: 10.1523/ENEURO.0230-20.2020
anne-urai's Repositories
anne-urai/Tools
all kinds of random code tools
anne-urai/largescale_recordings
Urai AE, Doiron B, Leifer AM & Churchland AK (2022) Large-scale neural recordings call for new insights to link brain and behavior. Nature Neuroscience
anne-urai/pupil_preprocessing_tutorial
Preprocess EyeLink pupillometry data using the FieldTrip toolbox
anne-urai/2019_Urai_choice-history-ddm
Urai AE, de Gee JW, Tsetsos K, Donner TH (2019) Choice history biases subsequent evidence accumulation. eLife
anne-urai/2017_Urai_pupil-uncertainty
Urai AE, Braun A, Donner TH. (2017) Pupil-linked arousal is driven by decision uncertainty and alters serial choice bias. Nature Communications 8:14637.
anne-urai/lab_wiki
This is the lab wiki. For more info about our team, research, blog and publications see https://anneurai.net.
anne-urai/motion_energy_filtering
Urai AE & Wimmer K (2016). Spatiotemporal motion energy filtering: a Matlab implementation.
anne-urai/2018_BergtUrai_pupil-memory
Bergt A, Urai AE, Donner TH, Schwabe L (2018) Reading memory formation from the eyes. European Journal of Neuroscience
anne-urai/yarle
Yarle - The ultimate converter of Evernote notes to Markdown
anne-urai/2022_Urai_choicehistory_MEG
Urai & Donner (2022). Persistent Activity in Human Parietal Cortex Mediates Perceptual Choice Repetition Bias
anne-urai/plot_gitlab_ibl_data
anne-urai/course-content
Summer course content for Neuromatch Academy
anne-urai/Mentoring
Various tips and tools for students
anne-urai/anne-urai.github.io
anne-urai/behavenet
Behavioral and neural analysis toolbox based on https://papers.nips.cc/paper/9701-behavenet-nonlinear-embedding-and-bayesian-neural-decoding-of-behavioral-videos.pdf
anne-urai/cleanBib
Probabilistically assign gender and race proportions of first/last authors pairs in bibliography entries
anne-urai/climate_dataviz
Net-zero pathways and their predictions for CO2 and global temperatures
anne-urai/climate_psychology
Collected examples and resources for incorporating climate crisis and action into the psychology curriculum.
anne-urai/confidence_racemodel
simulate simple LCA, see if RTs scale with decision uncertainty
anne-urai/ddm_mediation
anne-urai/hddm
HDDM is a python module that implements Hierarchical Bayesian parameter estimation of Drift Diffusion Models (via PyMC).
anne-urai/IBL-pipeline
DataJoint pipeline for IBL project
anne-urai/ibllib
IBL core shared libraries
anne-urai/iblscripts
Deployment scripts for ibl
anne-urai/Model-free_Model-based_Workshop
This folder contains all the material to be used in the FLUX 2021 Model-free and Model-based computational workshop
anne-urai/mouse_history_ddm
anne-urai/NSCI801-QuantNeuro
NSCI 801 (Queen's U) Quantitative Neuroscience course materials
anne-urai/seaborn
Statistical data visualization using matplotlib
anne-urai/slow_drift_correction
Fitting the model from Gupta & Brody to human behavioral data
anne-urai/tics-2020-tutorial
Tutorial on computational modeling and statistical model fitting part of the *Trends in Computational Neuroscience* graduate course of the University of Geneva (2020).