Pinned Repositories
advanced-shiny
Shiny tips & tricks for improving your apps and solving common problems
anorris8.github.io
Tips and tricks I have learned.
beepr
The package that sounds as it is called.
credential
mz.unity
mz.unity is an R package for detecting and exploring complex relationships in accurate-mass mass spectrometry data
NCI60_GeneMetabolite_Data
Nephele
Nephele Pipeline Scripts
RGEOde
The aim of the RGEOde project was to develop a bioinformatics unit that could be implemented broadly, by not requiring any computer programming experience and using free software and publically-available data. Teaching materials were designed to present the content in a tutorial, interactive fashion that appeals to multiple student learning styles. The lesson sequence builds on gene expression concepts covered in high school biology, reinforcing student comprehension through bioinformatics analysis of gene expression microarray data using the R programming language.
vcf-to-23andme
Convert imputed DNA.Land VCF to 23andMe V3 raw data format
warpgroup
The warpgroup algorithm takes multiple LC/MS samples and determines: 1. Segregation of those peaks into compound groups; 2. Per-group consensus integration bounds; 3. Integration bounds for samples in which no peak was detected.
anorris8's Repositories
anorris8/advanced-shiny
Shiny tips & tricks for improving your apps and solving common problems
anorris8/beepr
The package that sounds as it is called.
anorris8/Nephele
Nephele Pipeline Scripts
anorris8/23andMe-To-YSNPs
If you have a 23andMe raw data file which contains Y-DNA data with refSNPs/RSID but not the names of Y-SNPs in ISOGG format, this tool will help you. Please note that only positions of build 37 are supported.
anorris8/anorris8.github.io
Tips and tricks I have learned.
anorris8/NCI60_GeneMetabolite_Data
anorris8/RGEOde
The aim of the RGEOde project was to develop a bioinformatics unit that could be implemented broadly, by not requiring any computer programming experience and using free software and publically-available data. Teaching materials were designed to present the content in a tutorial, interactive fashion that appeals to multiple student learning styles. The lesson sequence builds on gene expression concepts covered in high school biology, reinforcing student comprehension through bioinformatics analysis of gene expression microarray data using the R programming language.
anorris8/Answers
Random code produced to answer questions on biostars/seqanswers/etc.
anorris8/biostats_exercises
anorris8/cseaR
Cell type enrichment analysis borrowing functions from pSI, EWCE, and phenoTest R packages.
anorris8/hmdbQuery
utilities for querying Human Metabolome Database
anorris8/ilikebigmobileelementsandicannotlie
anorris8/kandinsky
Turn any dataset into a Kandinsky painting
anorris8/Lace
Building SuperTranscripts: A linear representation of transcriptome data
anorris8/lenscleanR
Visual implementation of Monocle vignette in Shiny interactive environment
anorris8/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
anorris8/naniar
Tidy data structures, summaries, and visualisations for missing data
anorris8/ODG
ODG: Omics Database Generator - Integration toolkit for -omics data
anorris8/pheno4j
Pheno4j: a graph based HPO to NGS database
anorris8/R.I.D.A.R
This little piece of code filters through all of the MS1 scans of an MGF file to identify if all of the associated reporter ions are present. If the reporter ions are present then a fold change identification is run. If the fold change is higher than the set threshold, the entire MS1 will be written to a new MGF file that decreases the search time and file size when compared to the original file. This ensures that scans that cannot be quantified are removed and the overall file is de-cluttered.
anorris8/RagTag
Fast reference-guided genome assembly scaffolding
anorris8/rladies_bmo
RLadies Baltimore Chapter
anorris8/rnaseq
RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
anorris8/starfish
starfish: a modular toolkit for giant mobile element annotation
anorris8/SVeedy
anorris8/svm-r-markdown-templates
I have a suite of R Markdown templates for academic manuscripts, beamer presentations, and syllabi. I share them here.
anorris8/swigg_shiny
Shiny app for visualizing genome graphs from SWIGG
anorris8/tophat
Spliced read mapper for RNA-Seq
anorris8/traz
anorris8/workflowr
Organize your project into a research website