anorris8

anorris8's Stars

• nextflow-io/nextflow

  A DSL for data-driven computational pipelines

  Language:Groovy2.8k893.4k642

• EmilHvitfeldt/paletteer

  🎨🎨🎨 Collection of most color palettes in a single R package

  Language:R9461713746

• nf-core/rnaseq

  RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

  Language:Nextflow943157674713

• ryanlayer/samplot

  Plot structural variant signals from many BAMs and CRAMs

  Language:Python5341211567

• ruanjue/wtdbg2

  Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly

  Language:C5143025495

• malonge/RagTag

  Tools for fast and flexible genome assembly scaffolding and improvement

  Language:Python481818750

• arq5x/lumpy-sv

  lumpy: a general probabilistic framework for structural variant discovery

  Language:C31627332119

• ryanlayer/giggle

  Interval data structure

  Language:C227205529

• kaz-yos/tableone

  R package to create "Table 1", description of baseline characteristics with or without propensity score weighting

  Language:R217198641

• BioInfoTools/BBMap

  (Not Offical) BBMap short read aligner, and other bioinformatic tools.

  Language:Java2151037111

• ryanlayer/gqt

  A genotype query interface.

  Language:C135273624

• boxiangliu/locuscomparer

  LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.

  Language:R10662918

• quinlan-lab/sllobs-biostats

  Language:HTML7048618

• ryanlayer/stix

  Structural Variant Index

  Language:C708114

• 10XGenomics/supernova

  10x Genomics Linked-Read Diploid De Novo Assembler

  Language:C++6513726

• galaxyproject/admin-training

  Galaxy Admin Training

  Language:HCL60329162

• mgandal/Shared-molecular-neuropathology-across-major-psychiatric-disorders-parallels-polygenic-overlap

  Language:R263226

• h3abionet/h3agatk

  Language:Common Workflow Language2116814

• hms-dbmi/UpSetR-shiny

  A Shiny wrapper for the UpSetR R package (https://github.com/hms-dbmi/UpSetR).

  Language:R208226

• kmezhoud/bioCancer

  :cancer: :free: A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysis

  Language:R20245

• NCBI-Codeathons/SWIGG

  A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers

  Language:Python201247

• joepickrell/phenopredict21

  Command line tool to predict phenotype from VCF (gets models from pheno-server-21)

  Language:Python16318

• trichelab/MTseeker

  mitochondrial variant analysis tools

  Language:R13449

• NCBI-Codeathons/Virus_Graphs

  Making Representative Genome Graphs from Eukaryotic Viruses and Phages

  Language:Rich Text Format61103

• trichelab/biscuiteer

  tools for analysing Biscuit (https://huishenlab.github.io/biscuit/) output

  Language:R64911

• mossmatters/Phylo_Comp_Methods_Shiny

  Developing an app to demonstrate phylogenetic comparative methods in R.

  Language:R5330

• trichelab/MToolBox

  A bioinformatics pipeline to analyze mtDNA from NGS data

  Language:Python2300

• evanbiederstedt/SWIGG_annotate

  A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers

  Language:Python120

• rmflight/STRINGDatabaseManipulation

  R functions for working with STRING data

  Language:R120

• sdmiller93/fastawRangler

  A tool to extract or remove sequences based on an input list of sequence IDs.

  Language:R1200