ryanlayer/giggle

Issues

• Index multiple VCF files

  #64 opened 4 months ago by bio-bench
  9

• giggle: Could not open human_hm_sort/3651_sort_peaks.narrowPeak.bed.gz.

  #63 opened 4 months ago by MenglinC
  3

• Missing config. files?

  #68 opened a year ago by KarlSemaan
  9

• Compiling issue

  #65 opened a year ago by kearseya
  3

• make error

  #69 opened a year ago by rysterzhu
  2

• giggle_index.h redefinition of "leaf_data_cache_handler"

  #62 opened 3 years ago by mchowdh200
  0

• the append function is not defined

  #60 opened 3 years ago by fizwit
  0

• Segfault for Negative Interval Bounds

  #57 opened 4 years ago by sky123martin
  0

• Segfault when trying to index

  #56 opened 4 years ago by amathelier
  2

• Feature request: bioconda recipe

  #50 opened 5 years ago by mjsteinbaugh
  5

• Interactive heatmap not working

  #55 opened 4 years ago by retrogenomics
  0

• GIGGLE on Singularity

  #53 opened 5 years ago by HugoGuillen
  2

• Segmentation fault

  #52 opened 5 years ago by kopardev
  1

• extra (false positive) overlaps issue

  #51 opened 5 years ago by pkuksa
  0

• Unit test failing

  #47 opened 5 years ago by ignaciot
  0

• GIGGLE combo score 0 for highly overlapping files containing broad intervals

  #46 opened 5 years ago by angibekesi
  0

• Feature request - bed file header read/write/bulk retrieve

  #42 opened 5 years ago by pfsulliv
  1

• Feature request - custom background

  #45 opened 5 years ago by pfsulliv
  0

• Feature request - permutation testing

  #44 opened 5 years ago by pfsulliv
  0

• Feature request - Jaccard index

  #43 opened 5 years ago by pfsulliv
  0

• example doesn't work

  #41 opened 6 years ago by jkanche
  4

• Installation Error

  #40 opened 6 years ago by harinipras
  0

• Better error message when too many files are open

  #39 opened 6 years ago by ryanlayer
  0

• Incorrect result for edge case where there are more overlaps than db regions

  #38 opened 6 years ago by auberginekenobi
  0

• Install fails tests (Ubuntu subsystem in Windows)

  #37 opened 6 years ago by auberginekenobi
  0

• License and tagged release?

  #36 opened 7 years ago by tomkinsc
  0

• Problem indexing multiple bed files

  #35 opened 7 years ago by mvdbeek
  2

• Unable to sort inout file

  #34 opened 7 years ago by dhwani2410
  1

• don't return incorrect result silently on unsorted data

  #32 opened 7 years ago by brentp
  0

• Completion of error handling

  #30 opened 7 years ago by elfring
  0

• Improve const-correctness

  #29 opened 7 years ago by elfring
  0

• reserved identifier violation

  #28 opened 7 years ago by elfring
  0

• gargs command?

  #24 opened 7 years ago by HGENETIC
  17

• Take stdin as input for -q

  #26 opened 7 years ago by mvelinder
  0

• Can't run outside of directory

  #25 opened 7 years ago by mvelinder
  0

• Deleting a set.

  #12 opened 7 years ago by arq5x
  0

• add strand to nodes to enable stranded search

  #11 opened 7 years ago by arq5x
  0

• allow sending list of files when creating index

  #9 opened 7 years ago by brentp
  0

• inkids_rare.bed.gz test file available?

  #10 opened 7 years ago by ChristopherWilks
  2

• single-argument version of giggle_load()

  #8 opened 7 years ago by brentp
  1

• columns to index on

  #7 opened 9 years ago by zeeev
  0

• toolshed rename.py error

  #23 opened 7 years ago by HGENETIC
  2

• install errors

  #21 opened 7 years ago by retrogenomics
  6

• Availability of test data

  #22 opened 7 years ago by retrogenomics
  2

• examples for plotting utilities in scripts folder

  #20 opened 7 years ago by avilella
  1

• incrementing files in index

  #19 opened 7 years ago by avilella
  1

• When indexing, check to see if start/end are negative

  #18 opened 8 years ago by ryanlayer
  0

• api for indexing

  #17 opened 8 years ago by brentp
  0

• api clarifications

  #16 opened 8 years ago by brentp
  1

• Make a C library

  #6 opened 9 years ago by ryanlayer
  0