Pinned Repositories
.emacs.d
Emacs config
.tmux.d
tmux configuration
.vim
My vim configuration
1kg
animal_svs
arxiv-style
A Latex style and template for paper preprints (based on NIPS style)
cancer-sv-pipeline
samplot
Plot structural variant signals from many BAMs and CRAMs
samplot-ml
stix
Structural Variant Index
mchowdh200's Repositories
mchowdh200/samplot-ml
mchowdh200/animal_svs
mchowdh200/samplot
Plot structural variant signals from many BAMs and CRAMs
mchowdh200/stix
Structural Variant Index
mchowdh200/.emacs.d
Emacs config
mchowdh200/.tmux.d
tmux configuration
mchowdh200/.vim
My vim configuration
mchowdh200/1kg
mchowdh200/arxiv-style
A Latex style and template for paper preprints (based on NIPS style)
mchowdh200/cancer-sv-pipeline
mchowdh200/AsMac
mchowdh200/config-nvim
mchowdh200/config-zathura
mchowdh200/exome-copy
mchowdh200/giggle_test
test singularity container for running giggle in a fixed environment
mchowdh200/icgc-data
scripts for working with icgc data portal
mchowdh200/local-attention-flax
Local Attention - Flax module for Jax
mchowdh200/precision-medicine
mchowdh200/samplot-stix
workflows for samplot-stix prototyping
mchowdh200/seq-similarity-search
mchowdh200/ssec2
Stupid Simple Elastic Compute Cloud
mchowdh200/stix-pcawg-pipeline
stix index pipeline using pcawg data on AWS cloud
mchowdh200/SV2
Support Vector Structural Variation Genotyper
mchowdh200/sv_workshop
mchowdh200/svtyper
Bayesian genotyper for structural variants
mchowdh200/tuning_playbook
A playbook for systematically maximizing the performance of deep learning models.
mchowdh200/utils
mchowdh200/vector-integration-simulation-pipeline
A pipeline for simulating viral or vector integration into a host genome