Pinned Repositories
bedtools
A powerful toolset for genome arithmetic.
bedtools-protocols
bedtools2
bedtools - the swiss army knife for genome arithmetic
cyvcf
A fast Python library for VCF files leveraging Cython for speed.
filo
Useful FILe and stream Operations
gemini
a lightweight db framework for exploring genetic variation.
grabix
a wee tool for random access into BGZF files.
lumpy-sv
lumpy: a general probabilistic framework for structural variant discovery
poretools
a toolkit for working with Oxford nanopore data
arq5x's Repositories
arq5x/bedtools2
bedtools - the swiss army knife for genome arithmetic
arq5x/gemini
a lightweight db framework for exploring genetic variation.
arq5x/lumpy-sv
lumpy: a general probabilistic framework for structural variant discovery
arq5x/poretools
a toolkit for working with Oxford nanopore data
arq5x/bedtools
A powerful toolset for genome arithmetic.
arq5x/grabix
a wee tool for random access into BGZF files.
arq5x/cyvcf
A fast Python library for VCF files leveraging Cython for speed.
arq5x/bits
BITS: Binary Interval Search
arq5x/kway-mergesort
A templated C++ API for memory-assisted, k-way merge sorts
arq5x/vitae
arq5x/ascii_plots
Convenience function for quick and dirty data analysis
arq5x/arq5x.github.io
arq5x/goleft
goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
arq5x/mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targetted sequencing.
arq5x/aws-cli
Universal Command Line Interface for Amazon Web Services
arq5x/CaBagE-manuscript2
arq5x/covid-19-data
An ongoing repository of data on coronavirus cases and deaths in the U.S.
arq5x/covviz
calculate and view coverage based variation
arq5x/cyvcf2
cython + htslib == fast VCF and BCF processing
arq5x/d4-format
The D4 Quantatative Data Format
arq5x/ggd-recipes-1
conda recipes for genomic data
arq5x/giggle
Interval data structure
arq5x/igv.js
Embeddable genomic visualization component based on the Integrative Genomics Viewer
arq5x/markdown-cv
a simple template to write your CV in a readable markdown file and use CSS to publish/print it.
arq5x/mendacity
language-agnostic testing for inheritance models
arq5x/peddy
genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
arq5x/pyd4
The python binding for D4 format
arq5x/python-giggle
python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.
arq5x/samplot
Plot structural variant signals from many BAMs and CRAMs
arq5x/sketch
C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings