arq5x/gemini

Issues

• Installation Error

  #959 opened a year ago by ukesh-sys
  0

• ValueError: Processing failed on GEMINI chunk load

  #958 opened 2 years ago by tanayb001
  3

• Error in GEMINI Download

  #945 opened 2 years ago by skose82
  0

• Gemini not found error while loading chunks from VCF

  #957 opened 3 years ago by frankMusacchia
  4

• Failed fresh installation v0.30.2

  #956 opened 3 years ago by eddgeag
  0

• facing traceback and 'syntax error' while running this code - gemini load --cores 3 -t snpEff -v $NORMVCF $db

  #955 opened 3 years ago by monika7697
  0

• Wrong pysam version in Gemini 0.30.2 ('module' object has no attribute 'VariantRecord')

  #951 opened 4 years ago by jdelafon
  1

• Gemini load error with MuTect2 vcf 4.2

  #954 opened 3 years ago by 2bittofa
  0

• on Galaxy platform: ValueError: processing failed on GEMINI chunk load

  #953 opened 3 years ago by Hawke996
  0

• uninstall script

  #952 opened 4 years ago by OrionRandD
  0

• Compound Hets issue

  #927 opened 6 years ago by Phillip-a-richmond
  3

• Error installing

  #950 opened 4 years ago by Phillip-a-richmond
  0

• Documentation v30

  #949 opened 4 years ago by Phillip-a-richmond
  1

• question regarding sqlite Blob

  #948 opened 4 years ago by dridk
  3

• Installation issues

  #908 opened 6 years ago by afkoeppel
  8

• Unexpected results when using OR with comp_hets

  #946 opened 5 years ago by mmoisse
  4

• effstring.t03 test fails

  #943 opened 5 years ago by mmokrejs
  1

• cadd.t01 test fails

  #944 opened 5 years ago by mmokrejs
  0

• nogls-sub-bcolz.t14 test fails

  #942 opened 5 years ago by mmokrejs
  0

• nogls-sub-bcolz.t43 test fails

  #940 opened 5 years ago by mmokrejs
  0

• nogls.t2 test fails

  #941 opened 5 years ago by mmokrejs
  0

• TypeError: 'NoneType' object has no attribute '__getitem__

  #928 opened 6 years ago by kellogg76
  5

• add dict representation to GeminiRow

  #938 opened 5 years ago by matthdsm
  4

• Using gemini API in python3

  #937 opened 5 years ago by matthdsm
  8

• gnomAD genomes

  #935 opened 5 years ago by lbicknell
  0

• YAMLLoadWarning

  #934 opened 5 years ago by oleraj
  2

• gemini_install.py --gemini-version option not working

  #933 opened 5 years ago by gmteunisse
  0

• running setup.py install > RuntimeError: Python version >= 3.5 required

  #930 opened 5 years ago by DanielAmsel
  5

• KeyError: '1002296'

  #932 opened 5 years ago
  0

• Genotype filter using wildcard with gt_alt_freqs > 0.3

  #925 opened 6 years ago by OskarSchnappauf
  5

• Exception: gt_bases not implemented for ploidy > 2

  #931 opened 5 years ago by gormleymp
  1

• gemini - load chunk error with LSF scheduler

  #918 opened 6 years ago by Fazulur
  0

• gene list from `gemini burden` smaller than gene list from `gemini burden --calpha`

  #929 opened 5 years ago by mjsduncan
  1

• support for additional VEP terms

  #926 opened 6 years ago by jxchong
  6

• Empty line at the end of ped file breaks gemini load command

  #924 opened 6 years ago by mvelinder
  0

• PostgreSQL, what driver/gemini version(s) are compatible?

  #923 opened 6 years ago by JHibbard
  1

• Connecting to PostgreSQL or other databases?

  #916 opened 6 years ago by JHibbard
  2

• GATK4 compatibility?

  #922 opened 6 years ago by SarahBeecroft
  6

• gemini comp_hets memory issue

  #921 opened 6 years ago by 8nb24
  3

• error

  #920 opened 6 years ago by handomsu
  3

• error

  #919 opened 6 years ago by bioturing
  0

• release prep

  #912 opened 6 years ago by brentp
  46

• Problem during gemini load

  #917 opened 6 years ago by CarlosGAH
  13

• bcolz index for segregation

  #915 opened 6 years ago by 8nb24
  5

• --nonsynonymous option disables --min-aaf/--max-aaf in gemini burden

  #911 opened 6 years ago by wm75
  0

• gemini dump --genotypes no longer working

  #910 opened 6 years ago by wm75
  0

• Issues building database ( KeyError: u'start_retained_variant')

  #909 opened 6 years ago by hoppmann
  2

• gemini error no config found

  #907 opened 6 years ago
  0

• sqlite3 8-bit bytestring error while loading vcf into gemini

  #904 opened 6 years ago by mbootwalla
  5

• Add --gt-filter to built-in rare disease tools under strict assumptions

  #905 opened 6 years ago by arq5x
  0