arq5x/grabix

Issues

• incorrect output

  #9 opened 11 years ago by drmjc
  11

• Need to a account for headers (e.g., VCF)

  #1 opened 12 years ago by arq5x
  1

• GEMINI ISSUE

  #45 opened 4 years ago by shwetanavle
  0

• grabix size returns negative on large file

  #32 opened 7 years ago by aeschriefer
  1

• What would it take to enable S3 support

  #44 opened 6 years ago by andreas-wilm
  0

• Won't Compile !!!

  #38 opened 7 years ago
  6

• Know line number from .gbi?

  #39 opened 7 years ago by mpschr
  1

• Won

  #37 opened 7 years ago
  0

• Silent failure on FASTQ files with empty sequence entries (i.e. empty lines)

  #33 opened 7 years ago by roland-ewald
  7

• Need BAM support. Can index BAMs in the same way.

  #2 opened 12 years ago by arq5x
  1

• grabix hangs on non-bgzipped file

  #17 opened 8 years ago by brentp
  6

• allow bgzipping while indexing

  #30 opened 8 years ago by brentp
  0

• grabix on file with only header is wrong

  #27 opened 9 years ago by brentp
  0

• Grabix hangs when vcfs are not sorted

  #24 opened 9 years ago by joecop
  1

• Unclear license of grabix.cpp

  #5 opened 9 years ago by smoe
  2

• grabix grab some.vcf.gz 0 returns the 1st row of the file, but should throw an error

  #23 opened 9 years ago by bw2
  0

• Possible off-by-1 error at chunksize boundary

  #21 opened 9 years ago by schelhorn
  3

• grabix.cpp:258:58: error: 'getpid' was not declared in this scope

  #16 opened 10 years ago by bw2
  1

• Tag a releasee

  #15 opened 10 years ago by danielecook
  0

• patch to avoid uninitialised values, correcting cast int->uint64 for long files

  #8 opened 11 years ago by smoe
  1

• Makefile gaining flexibility to allow for platform-specific hardening

  #7 opened 11 years ago by smoe
  0

• Seed of a man page

  #6 opened 11 years ago by smoe
  0

• Speed up grab

  #4 opened 12 years ago by arq5x
  0

• Expose to Python with Cython interface

  #3 opened 12 years ago by arq5x
  0