Issues
- 0
- 0
Two Errors in Infographic for jaccard function
#1101 opened by keksundso - 1
- 1
bedtools not merging identical segments
#1100 opened by mirahan - 0
Error: Invalid record in file
#1098 opened by r-poloni - 1
getfasta -rna option does not work for plus strand line when setting -s option
#1084 opened by NaotoKubota - 0
need to include cstdint in ParseTools.h
#1096 opened by emyr666 - 1
Number can not keep consistant
#1092 opened by hsymoon - 0
Are there any means to speedup intersect?
#1091 opened by lokapal - 0
Option to skip first line
#1090 opened by bskubi - 1
shuffle -incl: Fall out of -incl include.bed file
#1089 opened by chenludi - 0
Undefined behavior in `bedtools expand`
#1088 opened by SoapGentoo - 0
Command bedtools makewindows -w 200 -s 50 -g resources/hg19.autoX.chrom.sizes not working
#1086 opened by gurudatta-patil - 3
Bedtools install on Mac
#1077 opened by luigallucci - 2
- 1
Memory issue while using coverage
#1054 opened by Sameerpython - 1
unable to install
#1082 opened by Heather1999 - 2
- 3
bamToFastq v2.31.0 records repeated
#1058 opened by brianjohnhaas - 0
- 1
tutorial link broken
#1079 opened by notestaff - 0
Example BED file(s) referenced throughout the docs are not tab delimited
#1078 opened by skchronicles - 0
remote file support
#1076 opened by geertvandeweyer - 0
Feature request: add -min option to genomecov
#1075 opened by ammaraziz - 0
Length calculation in `summary` is incorrect if intervals in the input file overlap
#1073 opened by tdanhorn - 1
the distance maximal by default of bedtools closest -D
#1071 opened by fafaris39 - 2
"intersect" tool test failure on i386
#1072 opened by emollier - 3
Does not compile in gcc 13.2.1
#1068 opened by balwierz - 3
missing include statements
#1056 opened by vpbrendel - 0
- 0
Difference of depth/mean coverage calculation among sambamba, bedtools, and mosdepth in high coverage panel data
#1065 opened by ipstone - 1
install bedtools on mac M2 chip
#1062 opened by yijiesung - 2
bedtools genomecov and non-primary alignments
#1061 opened by awgymer - 0
bamtobed WARNING
#1063 opened by songxh1996 - 0
Potential 32 bit overflow on parse of data with 2.2B lines
#1060 opened by wasade - 0
Incorrect examples for intersect "-c/-C" (counting overlaps) with multiple query DBs
#1059 opened by cljacobs - 1
[resolved] Strandedness `-s` not working in flankBed, producing no output
#1057 opened by mobilegenome - 0
gene overlap
#1055 opened by BeatrizFaustino - 2
bedtools merge input too long
#1053 opened by yongze-yin - 0
Received illegal bin number
#1051 opened by bijendrabio - 0
- 0
Broken output for a long BED record by intersectBed
#1049 opened by hkawaji - 0
bedtools unionbedg with header won't work
#1048 opened by ekushele - 0
misleading tutorial figure of reldist
#1047 opened by xzhuo - 1
non-deterministic error, VCF file line contains an unexpected number of fields
#1046 opened by williambrandler - 3
Getting gene name with getfasta
#1044 opened by davidaknowles - 1
***** WARNING: file GRCm38.p6.genome.size.bed has inconsistent naming convention for record
#1042 opened by li1311139481 - 0
bedtools 2.30.0 intersect with 0-length intervals
#1041 opened by ddrichel - 1
documentation for pairtopair not uptodate
#1040 opened by yfarjoun - 0
bedtools genomecov for a specific set of chromosomes
#1039 opened by vkkodali