Pinned Repositories
ipfun
microemacs
Jasspa's microemacs
modules
ruby-podcast
simple library and command line utility for creating podcast files from a directory of mp3 files. Fix ruby3 error
schedule-reminder-email
send email notice at specified days to group of recipients
svtools
Tools for processing and analyzing structural variants.
ipstone's Repositories
ipstone/microemacs
Jasspa's microemacs
ipstone/ipfun
ipstone/modules
ipstone/ruby-podcast
simple library and command line utility for creating podcast files from a directory of mp3 files. Fix ruby3 error
ipstone/awesome-streamerrc
Dotfiles for various streamers on Twitch.
ipstone/biallelic_hr
Source code and data for "Pan-cancer analysis of bi-allelic alterations in homologous recombination (HR) DNA repair genes" ; See manuscript @
ipstone/cbm_temp_announcement
Temporary announcement page with meeting place internet update
ipstone/chrome-reader-extension
Google Chrome extension built in react for a better reading experience.
ipstone/data
A data API for molecular biology
ipstone/debugging
Talk about general debugging strategies. How to be less confused and frustrated.
ipstone/dots
ipstone/EnhancedVolcanoJitter
Publication-ready volcano plots with enhanced colouring and labeling
ipstone/goleft
goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
ipstone/gospel2020
gospel2020
ipstone/homebrew-core
🍻 Default formulae for the missing package manager for macOS
ipstone/hugoinaction
Website for and source code accompanying Hugo In Action
ipstone/kjv
Read the Word of God from your terminal
ipstone/ListOfGithubLists
List of github lists
ipstone/maftools
a branch of maftools with randSeed, and nRun to extractSignatures function
ipstone/MutationalPatterns
R package for extracting and visualizing mutational patterns in base substitution catalogues
ipstone/NeoantigenEditing
study neoantigen
ipstone/nf-bam2fastq
Nextflow-based BAM-to-FASTQ conversion and FASTQ-sorting workflow.
ipstone/pubmed_miner
A demo on retrieving and clustering pubmed abstracts
ipstone/rloop_genome_instability
code acompanying Rloop genome instability paper
ipstone/SGZ
ipstone/SigMA
Mutational signature analysis for low statistics SNV data
ipstone/signature.tools.lib
R package containing useful functions for mutational signature analysis
ipstone/SigProfilerMatrixGenerator
SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.
ipstone/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
ipstone/TumorType-WGS
Classifying tumor types based on Whole Genome Sequencing (WGS) data