rloop_genome_instability
code acompanying Rloop genome instability paper
* Hightlights:
R-loop_consensus_regions/output:
The folder contains the consensus R-loop regions (bed files) calculated in the paper.
(We used the score 200 in the paper, for completeness, score 100 bed region file is also included).
* Folder/code structure:
- R-loop_consensus_regions:
scripts and final output for the consensus regions
* Consensus_overlap_analysis
│ ├── R-loop_TSS_TES_regions: Intersect Rloop regions with TSS/TES site regions.
│ ├── snvs_indels: Analysis SNVs and Indels mutations frequencies in Rloop regions.
│ └── structural_variants: Analysis for structural variants breakpoints frequencies in Rloop regions.