Incorrect examples for intersect "-c/-C" (counting overlaps) with multiple query DBs
cljacobs opened this issue · 0 comments
cljacobs commented
Very minor issue.
The current online documentation for bedtools intersect
appears to be incorrectly formatted for the counting options: -c
and -C
when demonstrated with multiple database files. The second database file, C.bed
is never specified in the example command(s). Also, when demonstrating the use of -filenames
/-names
, the query input file (-a A.bed
) is included as one of the database files; arguably, in the case of -names
, the output is correct for the input line (after adding C.bed
as a database), but it's misleading b.c. matching the names "a" and "b" to the files "B.bed" and "C.bed" is just confusing.