Pinned Repositories
a2wsgi
Convert WSGI app to ASGI app or ASGI app to WSGI app.
ansible
Ansible is a radically simple IT automation platform that makes your applications and systems easier to deploy. Avoid writing scripts or custom code to deploy and update your applications— automate in a language that approaches plain English, using SSH, with no agents to install on remote systems.
ansible-galaxy-extras
Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproject/ansible-galaxy with production services including nginx, uwsgi, supervisor, protftp, and slurm.
usegalaxy-tests
Run tests against usegalaxy.org
workflow2executable
Turn Galaxy Workflows into standalone scripts.
mvdbeek's Repositories
mvdbeek/bioconda-recipes
Conda recipes for the bioconda channel.
mvdbeek/galaxy
Data intensive biology for everyone.
mvdbeek/galaxytools
:microscope::books: Galaxy Tool wrappers
mvdbeek/usegalaxy-tools
usegalaxy.* common tools
mvdbeek/brc-analytics
mvdbeek/container-galaxy-sc-tertiary
Galaxy container for single cell RNA-Seq tertiary analysis tools
mvdbeek/cwl-ts-auto
Autogenerated TypeScript bindings for CWL
mvdbeek/ephemeris
Ephemeris is an opinionated library and set of scripts for managing the bootstrapping of Galaxy project plugins - tools, index data, and workflows.
mvdbeek/fastapi
FastAPI framework, high performance, easy to learn, fast to code, ready for production
mvdbeek/galaxy-hub
Galaxy project website, aka Galaxy Community Hub
mvdbeek/galaxy-maintenance-scripts
galaxy-maintainance-scripts
mvdbeek/gravity
Galaxy process management and system administration tools
mvdbeek/gxadmin
Handy command line utility for Galaxy administrators :rocket:
mvdbeek/gxformat2
Galaxy Workflow Format 2
mvdbeek/gxyarchiver
mvdbeek/idc
Simon's Data Club - Reference data for Galaxy servers
mvdbeek/infrastructure-playbook
Ansible playbook for managing UseGalaxy.eu infrastructure.
mvdbeek/iwc
Intergalactic Workflow Commission
mvdbeek/Jbrowse2
Non-reproducible, local tools that were installed to cn029
mvdbeek/planemo
Command-line utilities to assist in developing tools for the Galaxy project.
mvdbeek/planemo-ci-action
Installs planemo and discovers changed repositories of tools or workflows
mvdbeek/pulsar
Distributed job execution application built for Galaxy
mvdbeek/schema_salad
Semantic Annotations for Linked Avro Data
mvdbeek/tools-galaxyp
Galaxy Tool Shed repositories maintained and developed by the GalaxyP community
mvdbeek/tools-iuc
Tool Shed repositories maintained and developed by the Intergalactic Utilities Commission
mvdbeek/total-perspective-vortex
Total Perspective Vortex provides an installable set of dynamic rules for the Galaxy application that can route entities (Tools, Users, Roles) to appropriate job destinations based on a configurable yaml file.
mvdbeek/training-material
A collection of Galaxy-related training material
mvdbeek/usegalaxy-playbook
Ansible Playbook for usegalaxy.org
mvdbeek/wheelforge
Build Python wheels from recipes using cibuildwheel
mvdbeek/zenodo-upload
Utility to upload files to zenodo