ruanjue/wtdbg2

Issues

• Error message 'died at line 29'

  #265 opened a year ago by parima678
  5

• Segmentation fault (core dumped)

  #271 opened 3 months ago by iagooteroc
  0

• contig size doubled when doing local assembly

  #270 opened 7 months ago by volcano1998
  1

• adjust parameters to improve assemblies.

  #269 opened 8 months ago by dgs108
  0

• Phased assembly with wtdbg2 available?

  #268 opened 8 months ago by Jerry-bioinformatics
  1

• parameters for nanopore Q20 reads

  #267 opened 8 months ago by bernardo1963
  1

• Description in 'About' mismatch

  #266 opened a year ago by jowodo
  0

• Can I adjust the parameter "-l" when I use --load-alignments?

  #263 opened a year ago by Neo-xbx-00
  0

• the estimate of running time

  #262 opened a year ago by reddeery
  1

• Recomendation for AT-high and very repetitive genome

  #261 opened 2 years ago by V-JJ
  0

• contigN50 too small

  #259 opened 2 years ago by shiyi-pan
  13

• CCS data assemble far too small

  #260 opened 2 years ago by fkyoung1992
  4

• C++/ Python library

  #257 opened 2 years ago by Lionward
  1

• ".cns.fa" output

  #258 opened 2 years ago by asylvz
  1

• adjustable parameters with --load-alignments

  #255 opened 2 years ago by rwhetten
  3

• Only one sample or multiple samples can be used in wtdbg2?

  #256 opened 2 years ago by Neo-xbx-00
  1

• Ambiguous bases

  #254 opened 2 years ago by OliverPStuart
  1

• No Consensus ctg.fa file created

  #253 opened 2 years ago by katievigil
  5

• No such file: assembly.events

  #252 opened 2 years ago by ykc21e8
  4

• wtpoa-cns polishing details

  #249 opened 2 years ago by V-JJ
  9

• Died at /home/synbiolab/SoftWares/wtdbg2/wtdbg2.pl line 25.

  #251 opened 2 years ago by WHEREISSHE
  2

• Different contig numbers and contig length generated!

  #250 opened 2 years ago by cheehowteo
  1

• Runtime Issue with warnings

  #248 opened 2 years ago
  5

• Wtdbg2: Parameter -g setting problem

  #247 opened 2 years ago by 17863952296
  2

• Re-using kbm2 mapper

  #238 opened 3 years ago by anuradhawick
  1

• Enquiry about the parameter "-m"

  #246 opened 2 years ago by cyr20040123
  3

• I dont find wtpoa-cns script

  #245 opened 2 years ago by jccolon84
  0

• Parameters for assembling short sequences (generating small assemblies)

  #244 opened 3 years ago by javiercguard
  2

• Consensus step : genome size lower than pre-consensus stage

  #231 opened 4 years ago by shri1984
  10

• wtpoa-cns状态长时间不更新

  #242 opened 3 years ago by Neo-xbx-00
  4

• wtdbg2对杂合度以及重复序列敏感度的问题

  #243 opened 3 years ago by Neo-xbx-00
  1

• Separation of contigs by long deletions

  #241 opened 3 years ago by ziczhang
  3

• Using wtdbg2 to assemble phased haplotypes

  #240 opened 3 years ago by Redmar-van-den-Berg
  2

• Parameters for triploid HIFI

  #239 opened 3 years ago by ptranvan
  3

• How Wtdbg2 binning the reads? / How to restore the base sequence from binned sequence?

  #237 opened 3 years ago by cyr20040123
  4

• Any news on a Mac release?

  #235 opened 4 years ago by proukakis
  1

• Error correction

  #236 opened 4 years ago by gubrins
  1

• Specify amount of memory (RAM) to be used

  #233 opened 4 years ago by Sabryr
  10

• How does wtdbg2 deal with chimeric/siamaeric reads?

  #232 opened 4 years ago by A-J-F-Mackintosh
  2

• kbm2 alignments and wtdbg2

  #234 opened 4 years ago by joanam
  3

• 参数设置调整

  #226 opened 4 years ago by kuangtianhui
  4

• Long runtime - choosing correct parameters

  #229 opened 4 years ago by ctxchris
  5

• Parameter choice for big, repetitive genomes

  #230 opened 4 years ago by sighe
  1

• Simultaneous assembly of two similar genomes

  #228 opened 4 years ago by lamenace91
  4

• min length of alignment -l

  #225 opened 4 years ago by shri1984
  1

• Circularization?

  #224 opened 4 years ago by Boston1212
  4

• 参数使用问题

  #223 opened 4 years ago by azure-twilight
  2

• Change input fastq sequence length cutoff

  #222 opened 4 years ago by zeng22
  1

• version of wtdbg2 in conda

  #221 opened 4 years ago by shri1984
  1

• Trouble understanding the GFAs obtained from wtdbg2

  #220 opened 4 years ago by jflot
  5