Change input fastq sequence length cutoff
zeng22 opened this issue · 1 comments
zeng22 commented
Hi Jue: Your wtbg2 is a very nice tool for PacBio CCS read assembly. However, it seems that reads shorter than 1.2kb are ignored. We have PacBio CCS reads of ~1kb length. Is there any way to change the default input read length cutoff to use shorter reads as input? Thanks.
ruanjue commented
'-L' is the option for read length cutoff. But the length of vertex is 1024bp in FBG, it is the most min cutoff.