ryanlayer/gqt

Issues

• Unable to compile gqt from source

  #43 opened 3 years ago by fierytortilla
  0

• GQT error with URL data input

  #40 opened 6 years ago by arumds
  0

• make Error in MacOS Sierra

  #39 opened 6 years ago by arumds
  2

• gqt query crashes with large annotations (fix inside)

  #37 opened 8 years ago by jpiper
  1

• Create high-level and low-level APIs

  #27 opened 10 years ago by arq5x
  3

• Allow concurrent indexing jobs in the same directory

  #26 opened 8 years ago by ryanlayer
  4

• Creating sample database on disk very slow

  #38 opened 8 years ago by jeromekelleher
  0

• no variants returned without leading zero in `-g "maf()>0.10"`

  #36 opened 9 years ago by stephenturner
  0

• Possible typo in functional_tests.sh script

  #35 opened 9 years ago by tushardave26
  1

• Can I use gqt for Imputation data generated by IMPUTE2?

  #33 opened 9 years ago by tushardave26
  12

• perhaps a typo in functional_tests.sh

  #34 opened 9 years ago by hillan141
  1

• -h returns 64 exit code

  #32 opened 9 years ago by brainstorm
  1

• error with example from README

  #28 opened 10 years ago by brentp
  6

• compiling error

  #29 opened 10 years ago by zd1
  4

• Create a test example from Phase 3 1000 genomes to compare results to GEMINI

  #14 opened 10 years ago by arq5x
  2

• Reduce file size by inferring Homo Ref.

  #2 opened 10 years ago by ryanlayer
  2

• Standardize genotype shortcut constants

  #25 opened 10 years ago by arq5x
  1

• PED v. VCF/BCF sanity checking.

  #22 opened 10 years ago by arq5x
  6

• Make "maf" fucntion

  #24 opened 10 years ago by ryanlayer
  0

• Auto detect VID, BIM, WAH, DB file names based on BCF path in "query"

  #18 opened 10 years ago by ryanlayer
  0

• Phase 3 1000G files with complete annotations?

  #15 opened 10 years ago by arq5x
  0

• Compilation Problems and Handling Imputed Dosages?

  #20 opened 10 years ago by jziniti
  1

• The `convert wahbm` tool should infer `-f` and `-v` from BCF

  #17 opened 10 years ago by arq5x
  2

• Need to handle multiallelic variants that have been decomposed and normalized.

  #23 opened 10 years ago by arq5x
  0

• Look at improvements from a compressed the BIM file.

  #19 opened 10 years ago by ryanlayer
  1

• Add error message for mismatched PED/WAH index.

  #21 opened 10 years ago by ryanlayer
  1

• add avx add to query

  #16 opened 10 years ago by ryanlayer
  1

• How best to extract BCF records based on result of WAH query?

  #11 opened 10 years ago by arq5x
  1

• Support free form queries based on WAH index and PED

  #13 opened 10 years ago by arq5x
  1

• Wiki describing usage examples and proposed work.

  #10 opened 10 years ago by arq5x
  0

• Caching queries?

  #12 opened 10 years ago by ryananeff
  1

• Convert VCF to allele sorted WAHBM

  #3 opened 10 years ago by ryanlayer
  1

• Streamline BCF to WAH index conversion

  #9 opened 10 years ago by arq5x
  1

• Exclude the 4th bitmap from the range loops.

  #1 opened 10 years ago by ryanlayer
  0

• Print variant info similar to PLINK

  #4 opened 10 years ago by ryanlayer
  0

• Make AVX add_n_wahbm

  #5 opened 10 years ago by ryanlayer
  0