Pinned Repositories
American-Gut
American Gut open-access data and IPython notebooks
american-gut-analyses
american-gut-web
The website for the American Gut Project participant portal
bioconda-recipes
Conda recipes for the bioconda channel.
biom-format
The Biological Observation Matrix (BIOM) Format Project
emperor
qiita
Qiita - A QIIME databasing effort
version-testing-fastp-minimap2
version-testing for fastp-minimap2
qiime2
Official repository for the QIIME 2 framework.
scikit-bio
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
antgonza's Repositories
antgonza/version-testing-fastp-minimap2
version-testing for fastp-minimap2
antgonza/bioconda-recipes
Conda recipes for the bioconda channel.
antgonza/emperor
antgonza/qiita
Qiita - A QIIME databasing effort
antgonza/bloom-analyses
antgonza/cards
antgonza/deblur
Deblur is a greedy deconvolution algorithm based on known read error profiles.
antgonza/metagenomics_pooling_notebook
Jupyter notebooks to assist with sample processing
antgonza/mg-scripts
Knight Lab internal Metagenomic processing scripts for demultiplexing, QC and host removal
antgonza/q2-coordinates
methods for geographic mapping of qiime2 artifact data or metadata
antgonza/q2-feature-table
QIIME 2 plugin supporting operations on feature tables.
antgonza/q2-katharoseq
antgonza/qebil
antgonza/qiita-files
File formats defined for Qiita and Qiita plugins internal use
antgonza/qiita_client
A python library that simplifies the communication between the plugins and Qiita's REST api
antgonza/qp-deblur
antgonza/qp-fastp-minimap2
Fast QC and host filtering for Whole Genome Sequencing and Metatranscriptomic sequencing
antgonza/qp-knight-lab-processing
antgonza/qp-meta
Qiita Woltka processing plugin with fast bowtie2 implemenetation
antgonza/qp-qiime2
Qiime 2 plugin for Qiita
antgonza/qp-spades
Qiita plugin to process metagenomic assemblies and isolates
antgonza/qp-target-gene
antgonza/qp-woltka
antgonza/qtp-biom
antgonza/qtp-diversity
Qiita Type Plugin for diversity types
antgonza/qtp-job-output-folder
antgonza/qtp-sequencing
antgonza/qtp-visualization
Qiita type plugin for visualization artifacts
antgonza/redbiom
Sample search by metadata and features
antgonza/scikit-bio
Core objects, functions and statistics for working with biological data in Python.