Pinned Repositories
brie
BRIE: Bayesian Regression for Isoform Estimate
Brown-White-FBA
Generate flux predictions of brown and white adipocytes as performed in Ramirez et al., 2017
excelbi_puzzles
llm-course
Course to get into Large Language Models (LLMs) with roadmaps and Colab notebooks.
ML-for-histopathology
Histopathology is the study of diseases of tissues that involves the examination of microscopic slides consisting of tissues, cells, etc, that has been extensively used for the diagnosis of various forms of cancer. Histopathologists are medical experts who analyze cells or tissues under the microscope to make a diagnosis in order to come to a consensus regarding nature, the severity of diseases, and plan of action with regards to patient care. Medical imaging for diagnosis using Machine Learning and Classical computer vision is a very fastly growing area of research. Deep Learning, especially CNNs has become the methodology of choice when it comes to digital histopathology.
pread-brown-white
Code/output from paired analysis of brown vs. white human preadipocytes from Ramirez et al.
singlecell_pnm
:sparkles: Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neuron differentiation" by Song and Botvinnik, et al
SingleSplice
Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: http://nar.oxfordjournals.org/content/early/2016/01/05/nar.gkv1525.full
sybilxf
R package for integration of Seahorse extracellular flux (XF) data with metabolic modeling utilizing the R modeling package sybil.
Tutorials_Combining_ML_and_GSMM
anu-bioinfo's Repositories
anu-bioinfo/excelbi_puzzles
anu-bioinfo/llm-course
Course to get into Large Language Models (LLMs) with roadmaps and Colab notebooks.
anu-bioinfo/ActiveLearning_BindingAffinity
Benchmarking active learning protocols for ligand binding affinity prediction
anu-bioinfo/af2_conformations
A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
anu-bioinfo/awesome-conformal-prediction
A professionally curated list of awesome Conformal Prediction videos, tutorials, books, papers, PhD and MSc theses, articles and open-source libraries.
anu-bioinfo/awesome-deep-learning-single-cell-papers
anu-bioinfo/awesome-knowledge-graph
A curated list of Knowledge Graph related learning materials, databases, tools and other resources
anu-bioinfo/compbio_tutorials
My youtube programming scripts
anu-bioinfo/DesignPrinciplesGeneNetworks
A collection of functions and tools to analyze Boolean gene regulatory networks
anu-bioinfo/ElongationRate
Code used in the paper "Aging-associated changes in transcriptional elongation influence metazoan longevity".
anu-bioinfo/gcp-for-bioinformatics
GCP for Bioinformatics Researchers
anu-bioinfo/GenAI4Drug
anu-bioinfo/Geometry-Deep-Learning-for-Drug-Discovery
Geometry Deep Learning for Drug Discovery and Life Science
anu-bioinfo/Hands-On-Machine-Learning-with-CPP
Hands-On Machine Learning with C++, published by Packt
anu-bioinfo/HEPML-LivingReview
Living Review of Machine Learning for Particle Physics
anu-bioinfo/immunotherapy_scRNAseq_papers
anu-bioinfo/iqb-2024
Notebooks and environment set up for IQB 2024 workshop - Python for Molecular Docking
anu-bioinfo/Lab_cross_15_vertebrates_adiposes_papre_code
anu-bioinfo/machine_learning_cpp
Machine Learning C++
anu-bioinfo/Medical-Quantum-Machine-Learning
Practical Cancer Drug Discovery Generative Artificial Intelligence Software Innovation
anu-bioinfo/MetricsMLNotebooks
Notebooks for Applied Causal Inference Powered by ML and AI
anu-bioinfo/MuMo-V2-Node-PCB
PCB design for the Museum Monitor V2
anu-bioinfo/papers_with_data_to_mine
published papers with a lot of data
anu-bioinfo/Python-programming-exercises
100+ Python challenging programming exercises
anu-bioinfo/r-base-shortcuts
⚡ Base R shortcuts: A collection of lesser-known but powerful idioms and coding patterns for writing concise and fast R code
anu-bioinfo/R-graph-gallery
A website that displays hundreds of R charts with their code
anu-bioinfo/random_priming
anu-bioinfo/scRNA-seq_notes
A list of scRNA-seq analysis tools
anu-bioinfo/stanTutorial
Files for StanCon 2023 tutorial.
anu-bioinfo/StatResourcesHub
StatsResourcesHub: Your go-to repository for all things statistics and programming. Find tutorials, code samples, and tips in Python, R, and more. Perfect for learners and data enthusiasts alike!