anykine
PhD genomics/bioinformatics, data science, statistics, full stack scientist - bench to bedside to cloud.
UCLA Department of Human GeneticsLos Angeles, CA
Pinned Repositories
2015-11-12-ucla
HPC and Big Data Analytics using Comet - SDSC’s latest Computing Resource through XSEDE
anykine.github.io
asdpex
badgene
problematic, polymorphic genes
DuchenneConnect2016
Analysis of Duchenne Registry data
omim
rnaseq_tools
generate RNA-seq scripts on SGE cluster
anykine's Repositories
anykine/omim
anykine/2015-11-12-ucla
HPC and Big Data Analytics using Comet - SDSC’s latest Computing Resource through XSEDE
anykine/anykine.github.io
anykine/asdpex
anykine/badgene
problematic, polymorphic genes
anykine/DuchenneConnect2016
Analysis of Duchenne Registry data
anykine/rnaseq_tools
generate RNA-seq scripts on SGE cluster
anykine/bioc-refcard
Bioconductor cheat sheet
anykine/bx-python
Tools for manipulating biological data, particularly multiple sequence alignments
anykine/cellphonedb
anykine/emma
anykine/exonViz
visualize exon usage d3
anykine/gatk4-germline-snps-indels
Workflows for germline short variant discovery with GATK4
anykine/hgvs
HGVS variant name parsing and generation
anykine/leafcutter
LeafCutter: Annotation-free quantification of RNA splicing. Yang I Li, David A Knowles, Jonathan K Pritchard.
anykine/machine_learning_examples
A collection of machine learning examples and tutorials.
anykine/MendelianRNA-seq
anykine/myhadoop
Framework for deploying Hadoop clusters on traditional HPC from userland
anykine/nf-regtools
anykine/PubMed
PubMed analysis: code and data
anykine/pylmm
A fast and lightweight python-based linear mixed-model solver for use in genome-wide association studies.
anykine/pysam
Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
anykine/radiationHybrid
anykine/reactinterface
Project for Building an Interface with React Course on Lynda.com
anykine/rnaseq_pipeline_example
anykine/sdsc-summer-institute-2015
anykine/SKAT_NGS-2015
anykine/ucsc_dmd_hub
anykine/Udemy-notes
My udemy notebooks
anykine/vim-as-an-ide
Workshop on how to use Vim Plugins.