/rnaseq_pipeline_example

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Example scripts RNA-seq

RNA-seq analysis example scripts. These are SGE scripts.

  • kallisto
  • STAR
  • FASTQC - QC
  • splicetrap - splicing analysis pretty old

Other tools used in the past

  • MISO
  • leafcutter
  • suppa

Richard T Wang (rtwang@mednet.ucla.edu)