Applied Bioinformatics Laboratory
ABiL offers a wide range of bioinformatics services to address data analysis and workforce development needs.
Atlanta, GA
Pinned Repositories
2021-QBiosWorkshop
R shiny examples for QBios Workshop May 2021
covid19-event-risk-planner
COVID19 risk planner R-Shiny application
CovidOnCampus-API-Bridge
Serverless API bridge
el_gato
GaTech-Weitz-ShieldImmunity
Weitz Sheild Immunity dashboard components
MAGEmodel_covid19_GA
Metapopulation AGe-structured Epidemiological (MAGE) model for COVID-19 in Georgia
pima
Plasmid and antimicrobial resistance pipeline
pima-docker
Seperating the Docker Installation and codebase from the core pima codebase. This way the latest version is always created with the latest docker
pima-docker2
Volume based Pima Docker
URDO-SMOREd
Sequence Matching fOr REpiratory Diseases, SMORE'D, is a command-line sequence classification tool tailored to meet the needs of the Undiagnosed Respiratory Disease Outbreak (URDO) branch at CDC. SMORE'D is a k-mer based classification tool capable of rapidly classifying read sequences generated by multi-pathogen detection platforms.
Applied Bioinformatics Laboratory's Repositories
appliedbinf/covid19-event-risk-planner
COVID19 risk planner R-Shiny application
appliedbinf/pima
Plasmid and antimicrobial resistance pipeline
appliedbinf/el_gato
appliedbinf/2021-QBiosWorkshop
R shiny examples for QBios Workshop May 2021
appliedbinf/pima-docker
Seperating the Docker Installation and codebase from the core pima codebase. This way the latest version is always created with the latest docker
appliedbinf/CovidOnCampus-API-Bridge
Serverless API bridge
appliedbinf/GaTech-Weitz-ShieldImmunity
Weitz Sheild Immunity dashboard components
appliedbinf/URDO-SMOREd
Sequence Matching fOr REpiratory Diseases, SMORE'D, is a command-line sequence classification tool tailored to meet the needs of the Undiagnosed Respiratory Disease Outbreak (URDO) branch at CDC. SMORE'D is a k-mer based classification tool capable of rapidly classifying read sequences generated by multi-pathogen detection platforms.
appliedbinf/covid_shield_immunity
Modeling the Role of ‘Shield Immunity’ in Reducing COVID-19 Epidemic Spread
appliedbinf/genecaller
A stringMLST-based approach to gene calling and annotation
appliedbinf/MAGEmodel_covid19_GA
Metapopulation AGe-structured Epidemiological (MAGE) model for COVID-19 in Georgia
appliedbinf/pima-docker2
Volume based Pima Docker
appliedbinf/pima_md
This implementation of PIMA uses Markdown instead of tectonic. Operation is largely the same though the packages used slightly different.
appliedbinf/URDO-CANDy
CANDy, the Custom AmplicoN Database tool, allows users to create custom BLAST databases using amplicons created with in silico PCR
appliedbinf/c19r-app
appliedbinf/c19rdata
appliedbinf/constructor
tool for creating installers from conda packages
appliedbinf/GaTech-Weitz-SheildImmunity-FrontEnd
Bootstrap frontend for shieldimmunity.org
appliedbinf/hope
Assessment of homopolymer performance of ONT sequencing
appliedbinf/mycetomatis_analysis_workflow
Collection of scripts describing how Mycetomatis datasets were processed