callVarBam.py fails with taskset: failed to set pid 0's affinity: Invalid argument

[jazberna1]

Hello,

I have noticed that some of the executions of callVarBam.py fail with this error:

callVarBam.py fails with taskset: failed to set pid 0's affinity: Invalid argument

At least in my case all the executions are the same with the exception of the --ctgStart , --ctgEnd and the --call_fn params.

Also I have noticed that removing the --threads option fixes the issue. Is there any reason for this?

Thanks so much
Jorge

[aquaskyline]

Do you have 'taskset' in your running environment?