aquaskyline
Computational Biologist, Associate Professor at HKUCS
The University of Hong KongHong Kong
Pinned Repositories
Clairvoyante
Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
LRSIM
10x Genomics Reads Simulator
Skyhawk
An Artificial Neural Network-based discriminator for validating clinically significant genomic variants
SOAP3-dp
To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be configured to favor speed in trade of accuracy and sensitivity. SOAP3-dp, through leveraging the computational power of both CPU and GPU with optimized algorithms, delivers high speed and sensitivity simultaneously.
SOAPdenovo-Trans
SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome datasets from rice and mouse.
SOAPdenovo2
Next generation sequencing reads de novo assembler.
Clair
Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling
Clair3
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
ClairS
ClairS - a deep-learning method for long-read somatic small variant calling
megahit
Ultra-fast and memory-efficient (meta-)genome assembler
aquaskyline's Repositories
aquaskyline/SOAPdenovo2
Next generation sequencing reads de novo assembler.
aquaskyline/Clairvoyante
Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
aquaskyline/LRSIM
10x Genomics Reads Simulator
aquaskyline/Skyhawk
An Artificial Neural Network-based discriminator for validating clinically significant genomic variants
aquaskyline/SOAP3-dp
To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be configured to favor speed in trade of accuracy and sensitivity. SOAP3-dp, through leveraging the computational power of both CPU and GPU with optimized algorithms, delivers high speed and sensitivity simultaneously.
aquaskyline/SOAPdenovo-Trans
SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome datasets from rice and mouse.
aquaskyline/16GT
Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
aquaskyline/Clair
aquaskyline/MICA-aligner
MICA-aligner is a new short-read aligner that is optimized in view of MIC's limitation and the extra parallelism inside each MIC core.
aquaskyline/SOAPcoverage
aquaskyline/aquaskyline.github.io
aquaskyline/bioconda-recipes
Conda recipes for the bioconda channel.
aquaskyline/Blockchain-Application-for-Biomedical-Data
aquaskyline/vcf2diploid
personal genome constructor
aquaskyline/WannaAln