aquaskyline/SOAPdenovo2

Issues

• compilation is not working

  #97 opened 7 months ago by CodeBlack589
  0

• get_scafSeq_to_fasta.pl script

  #95 opened 10 months ago by Wyclif3
  1

• compilation from source failed on debian11, gcc11.2 - patch added

  #86 opened 8 months ago by schloegl
  2

• compilation is not working on EL/rocky 9

  #96 opened 9 months ago by eylenth
  0

• SOAPdenovo2 installation error

  #88 opened 2 years ago by AbRawoof
  3

• reading too few reads? Not supporting gz format?!

  #63 opened 5 years ago by bitcometz
  3

• cannot open *.kmerFreq file after pregraph, then exit

  #93 opened a year ago by cqh1
  0

• Challenges with Scaffold Statistics in SOAPdenovo2 Assembly: Number_of_contigs_in_scaffolds

  #92 opened a year ago by Simon602
  0

• Using a compressed file during the "pregraph" process may lead to program exit

  #91 opened a year ago by shiinachaos
  0

• cgroup out-of-memory handler

  #90 opened 2 years ago by cnxiaobo94
  0

• SOAPdenovo parameter -K

  #89 opened 2 years ago by 17863952296
  0

• Negative number of edges in pregraph

  #87 opened 2 years ago by Aphrix
  0

• Crashed building contigs

  #50 opened 6 years ago by shanesturrock
  10

• Ran out of memory while applying -64982367872bytes

  #85 opened 3 years ago by WJT0925
  0

• soap didn't read fastq files in Pregraph and Contig

  #84 opened 3 years ago by sqwwww
  2

• Getting the following Error during SOAPdenovo installation

  #83 opened 3 years ago by bandana98
  0

• SOAPdenovo-fusion (command not found...)

  #49 opened 7 years ago by ptsij
  4

• question about the output file .scafSeq file when using SOAPdenovo2

  #82 opened 3 years ago by wangc1106
  0

• Dealing graph with too many edges

  #74 opened 3 years ago by dfguan
  1

• not resolved gaps of 1 nucleotide

  #80 opened 3 years ago by glopatriello
  1

• final link failed: Nonrepresentable section on output

  #78 opened 3 years ago by iquasere
  1

• Are the new releases really new releases?

  #81 opened 3 years ago by reinator
  1

• GapCloser: Segmentation fault (core dumped)

  #77 opened 3 years ago by iquasere
  1

• soapaligner is not working

  #79 opened 3 years ago by chitiagarwal
  5

• operation

  #76 opened 4 years ago by BAOjinbo
  6

• Empty fastq input results in infinite "air_return error" loop

  #75 opened 4 years ago by magcurly
  1

• segmentation fault (core dumped)

  #67 opened 5 years ago by bioramg
  2

• About the err.txt

  #73 opened 4 years ago by Otis-chan
  2

• Tag r242

  #72 opened 4 years ago by njbooher
  2

• Soap denovo with multiple libraries

  #71 opened 5 years ago by jvkheni
  0

• Small N50 due to read length cutoff

  #70 opened 5 years ago by shanewidanagama
  2

• No arcs being generated, resulting in zero scaffolds

  #66 opened 5 years ago by mchaney1
  3

• Compilation error

  #69 opened 5 years ago by pbravakos
  1

• High gap percentage in scaffold assembly

  #68 opened 5 years ago by shanewidanagama
  0

• Cannot find SOAPdenovo2/SOAPdenovo2/GapCloser

  #65 opened 5 years ago by qbdong
  1

• In Makefile compilation do not considere CFLAGS arguments

  #64 opened 5 years ago by hdevillers
  0

• 16435 Segmentation fault during pregraph step

  #54 opened 5 years ago by AllisonStander
  0

• incompatible libbam.a

  #61 opened 5 years ago by xqhuang1018
  1

• Segmentation fault during contig step

  #53 opened 6 years ago by AllisonStander
  1

• Segmentation fault while reading fastq files

  #51 opened 6 years ago by abshah
  1

• make err

  #52 opened 6 years ago by seqyuan
  1

• Scaff step crashes because of long gzip command

  #57 opened 6 years ago by sturgman
  0

• Error while Installation $make

  #60 opened 6 years ago by harigowthem
  1

• Config file

  #59 opened 6 years ago by SIlviaHinojosa
  3

• Make error with Ubuntu 18.04 LTS

  #58 opened 6 years ago by elvenwhite
  2

• SOAPdenovo-fusion

  #56 opened 6 years ago by garfring
  0

• much larger genome size

  #55 opened 6 years ago by zdz1989
  0

• About the setting of parameters

  #48 opened 7 years ago by Xuelei-Dai
  0

• Makefile:65: recipe for target 'SOAPdenovo-63mer' failed

  #47 opened 7 years ago by BenjaminGuinet
  0

• set proper input

  #46 opened 7 years ago by mossishahi
  1