aquaskyline/Clairvoyante
Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
PythonBSD-3-Clause
Issues
- 1
No output in commands.sh
#50 opened by zya226 - 2
- 1
PacBio hifi
#48 opened - 1
PyPy
#47 opened by sledford921 - 1
Check that BAM is indexed
#46 opened by flashton2003 - 2
How is the QUAL metric calculated?
#45 opened by flashton2003 - 2
GPU conda install docs remove Clairvoyante
#44 opened by CanWood - 1
- 4
Applying full support for the IUPAC nucleotide code standard for better robustness?
#41 opened by yjx1217 - 1
- 1
exit for empty bam
#14 opened by sinamajidian - 1
samtools should be added as a conda requirement
#26 opened by pjedge - 1
SNV report is not consistent with the bam file
#39 opened by HJTsai - 1
callVarBam.py fails with taskset: failed to set pid 0's affinity: Invalid argument
#38 opened by jazberna1 - 1
- 2
Failed to tabix the generated vcf files
#37 opened by alex538 - 1
Non-human data?
#36 opened by royfrancis - 1
TrainingModels and new Bam file
#34 opened by yangxiaofeill - 13
- 1
trainedModels directory
#32 opened by yangxiaofeill - 2
cannot connect to X server localhost
#31 opened by simoncchu - 1
- 2
- 3
conda installation intervaltree
#24 opened by wdecoster - 2
Error running Clairvoyante callVarBam
#27 opened by pjedge - 1
Score distribution
#23 opened - 7
Allele frequency greater than 1
#21 opened - 7
Non-model species training
#17 opened by andreaminio - 3
genotype and estimated allele frequency
#19 opened by axgraf - 1
taskset fails to set pid XXX's affinity
#20 opened by andreaminio - 2
FILTER and INFO fields
#18 opened - 2
Is a docker image available?
#16 opened by PhilPalmer - 2
zsh: no such option
#15 opened - 6
- 1
genome assembly
#13 opened by lfaino - 4
taskset: failed to parse CPU list
#11 opened by hr283 - 6
problem in
#12 opened by sinamajidian - 3
- 2
- 2
PASS flag for SNP and VCF header
#5 opened by fritzsedlazeck - 2
TypeError in callVarBam.py
#4 opened by aechchiki