PyPy
sledford921 opened this issue · 1 comments
sledford921 commented
Hello! So whenever I try to run something along the lines of the sample mentioned in the instructions:
cd training
python ../clairvoyante/callVarBam.py
--chkpnt_fn ../trainedModels/fullv3-illumina-novoalign-hg001+hg002-hg38/learningRate1e-3.epoch500
--bam_fn ../testingData/chr21/chr21.bam
--ref_fn ../testingData/chr21/chr21.fa
--bed_fn ../testingData/chr21/chr21.bed
--call_fn chr21_calls.vcf
--ctgName chr21
I keep running into this error:
Error: pypy executable not found
Do you know what might be causing this? Thanks a ton!
-Marshall
aquaskyline commented
You need to have pypy installed. Please refer to the readme for me details.
You may also want to try out the latest version at https://github.com/HKU-BAL/Clair/