make.sh fails
Closed this issue · 4 comments
I download version 1.0.4 and after executing make.sh:
[a1634120@l03 SOAPdenovo-Trans-1.0.4]$ sh make.sh
../SOAPdenovo-Trans-31mer cleaning done.
/usr/bin/ld: cannot find -lm
/usr/bin/ld: cannot find -lrt
/usr/bin/ld: cannot find -lz
/usr/bin/ld: cannot find -lpthread
/usr/bin/ld: cannot find -lc
collect2: error: ld returned 1 exit status
make: *** [SOAPdenovo] Error 1
../SOAPdenovo-Trans-127mer cleaning done.
/usr/bin/ld: cannot find -lm
/usr/bin/ld: cannot find -lrt
/usr/bin/ld: cannot find -lz
/usr/bin/ld: cannot find -lpthread
/usr/bin/ld: cannot find -lc
collect2: error: ld returned 1 exit status
make: *** [SOAPdenovo] Error 1
[a1634120@l03 SOAPdenovo-Trans-1.0.4]$ gcc --version
gcc (GCC) 4.8.5 20150623 (Red Hat 4.8.5-11)
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
did you figure this out i am running into the same issue.
@whositwhatnow
it’s an issue with the script and ld not finding the libraries where it thinks they ought to be on your system. i think there’s another closed issue that has instruction on how to fix. i’ll look for it and post a link to it shortly
okay, don’t laugh, but it turns out the issue i alluded to above is one that i wrote (and i wrote the workarounds for). ha! anyway, here: #1