Pinned Repositories
autopacmen
Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method
COMMIT
COMMIT: Community-dependent gap-filling considering metabolite leakage
Crekapp
Proteomics and constraint-based modelling reveal enzyme kinetic properties of C. reinhardtii on a genome-scale
GRN_code
This repository contains the code for the creation of gene regulatory networks presented in the publication "Widening the landscape of transcriptional regulation of green algal photoprotection"
GRN_web
This repository contains the source code for the R Shiny server application allowing to query the gene regulatory network presented in https://www.nature.com/articles/s41467-023-38183-4
NIDLE-flux-code
autopacmen
Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method
PRESTO
PRESTO: Correction of turnover numbers in enzyme-constraint metabolic models
arendma's Repositories
arendma/Crekapp
Proteomics and constraint-based modelling reveal enzyme kinetic properties of C. reinhardtii on a genome-scale
arendma/GRN_web
This repository contains the source code for the R Shiny server application allowing to query the gene regulatory network presented in https://www.nature.com/articles/s41467-023-38183-4
arendma/GRN_code
This repository contains the code for the creation of gene regulatory networks presented in the publication "Widening the landscape of transcriptional regulation of green algal photoprotection"
arendma/autopacmen
Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method
arendma/COMMIT
COMMIT: Community-dependent gap-filling considering metabolite leakage
arendma/NIDLE-flux-code