klamt-lab/autopacmen
Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method
HTMLApache-2.0
Issues
- 0
PERFORMANCE: `create_smoment_model_reaction_wise_with_sbml` gets bogged down in recent cobrapy release
#28 opened by yaccos - 0
Malformed enzyme stoichiometry spreadsheet
#27 opened by yaccos - 1
Potential bug in k-cat lookup
#26 opened by yaccos - 1
get_reactions_kcat_mapping
#23 opened by FraserAndrews7 - 1
Uniprot API change
#24 opened by yaccos - 1
UnboundLocalError in parse_brend_textfile.py
#20 opened by arendma - 1
Error in modeling_create_smoment_model.py
#22 opened by arendma - 1
- 2
- 1
Enzyme pool reported as mmol/gDW in print
#13 opened by emikar - 2
- 0
bug in BRENDA parsing
#17 opened by voidsailor - 2
get_initial_spreadsheets does not correctly create enzyme_stoichiometries.xlsx file
#11 opened by diana-sz - 0
Reactions with isoenzymes are not split correctly if proteomics data is provided
#12 opened by diana-sz - 2
Procedure for protein mass determination
#8 opened by yaccos - 1
- 4
- 1
Error in data_parse_brenda_textfile.py
#5 opened by yaccos - 1
- 2
Handling of missing Sabio-RK entries
#6 opened by yaccos - 4
- 1
cannot import autopacmen-Paulocracy
#2 opened by gretarsson