ARTICnetwork
This is the ARTICnetwork project, a Wellcome Trust funded project to provide a system for real-time genomic epidemiology of virus outbreaks.
Pinned Repositories
artic-base
A base template for an implementation of an ARTIC install. This can be forked and modified for specific use-cases.
artic-ncov2019
ARTIC nanopore protocol for nCoV2019 novel coronavirus
civet
Cluster Investigation & Virus Epidemiology Tool
fieldbioinformatics
The ARTIC field bioinformatics pipeline
lab-on-an-SSD
Scripts for building the ARTIC lab-on-an-SSD
polecat
Porechop
adapter trimmer for Oxford Nanopore reads
primer-schemes
Primer schemes for real-time genome epidemiology
rampart
Read Assignment, Mapping, and Phylogenetic Analysis in Real Time
readucks
Nanopore read de-multiplexer
ARTICnetwork's Repositories
artic-network/artic-ncov2019
ARTIC nanopore protocol for nCoV2019 novel coronavirus
artic-network/fieldbioinformatics
The ARTIC field bioinformatics pipeline
artic-network/rampart
Read Assignment, Mapping, and Phylogenetic Analysis in Real Time
artic-network/civet
Cluster Investigation & Virus Epidemiology Tool
artic-network/primer-schemes
Primer schemes for real-time genome epidemiology
artic-network/readucks
Nanopore read de-multiplexer
artic-network/lab-on-an-SSD
Scripts for building the ARTIC lab-on-an-SSD
artic-network/polecat
artic-network/Porechop
adapter trimmer for Oxford Nanopore reads
artic-network/artic-base
A base template for an implementation of an ARTIC install. This can be forked and modified for specific use-cases.
artic-network/artic-ebov
Repository of documents and data for Ebola virus
artic-network/artic-rsv
artic-network/scylla
single sample processing
artic-network/website
artic-network/artic-measles
Repository for realtime sequencing of measles virus using the MinION
artic-network/artic-workshop
Repository of material for the ARTIC workshop on real-time sequencing for outbreak response.
artic-network/ebolavirus
A repository of information and resources about viruses in the genus Ebolavirus
artic-network/rampart-denv2
artic-network/rampart-ebov
A RAMPART protocol and environment for sequencing Ebola viruses
artic-network/rampart-iva
artic-network/rampart-nipah
artic-network/artic-live
artic-network/artic-nipah
ARTIC real-time package for Nipah virus (NiV)
artic-network/ebov_drc_2018
artic-network/fieldlab
Descriptions of the ARTIC field laboratory
artic-network/nanopolish
Signal-level algorithms for MinION data
artic-network/old-site