artic-network/rampart

Issues

• rampart with dorado's .fastq

  #117 opened 4 months ago by doloacu
  1

• under what coverage for a position there would be "N" in the consensus sequence?

  #89 opened a year ago by dinavb
  0

• Be able to provide a barcode to sample name mapping from a CSV/TSV file

  #115 opened a year ago by rambaut
  0

• File watching doesn't work in Windows Subsystem for Linux

  #114 opened a year ago by rambaut
  0

• Inclusion Native Barcoding 96 Expansion barcodes (ONT)

  #83 opened a year ago by menickname
  6

• using the fastq.gz files demultiplexed

  #91 opened a year ago by josephhughes
  1

• Latest release: v1.0.6 or v1.2.0?

  #92 opened a year ago by sassy-crick
  1

• Multiples genomes

  #113 opened 2 years ago by SergioBuenestadoSerrano
  1

• System limit for number of file watchers reached when using millions of reads

  #90 opened 4 years ago by jagos01
  1

• Add custom_barcodes to the annotationOptions config choices

  #88 opened 4 years ago by JudoWill
  1

• how to translate from locations on the genomes in the VCF to the mutation in aa?

  #87 opened 4 years ago by dinavb
  0

• showing different samples

  #86 opened 4 years ago by dinavb
  2

• Feature request: add extra charts with read information using seqkit

  #84 opened 4 years ago by rmcolq
  0

• FATAL ERROR: Ineffective mark-compacts near heap limit Allocation failed - JavaScript heap out of memory

  #77 opened 5 years ago by Psy-Fer
  6

• Add --cores argument to snakemake calls

  #72 opened 5 years ago by jameshadfield
  5

• Fastqs with the same name in different folders are excluded from analysis

  #73 opened 5 years ago by MaestSi
  9

• ncov2019 protocol version 3

  #81 opened 5 years ago by MaestSi
  1

• Scale 'unassigned' barcode bar to be per sample

  #76 opened 5 years ago by rambaut
  1

• Support for fastq.gz

  #64 opened 5 years ago by mattdmem
  2

• Include a coverage heat-map above amplicon graphic for each sample

  #75 opened 5 years ago by rambaut
  0

• Show coverage plot in summary panel

  #74 opened 5 years ago by rambaut
  0

• error in running the examples EBOV dataset

  #69 opened 5 years ago by micheledellab
  11

• Improve documentation of config args to post processing scripts

  #55 opened 5 years ago by aineniamh
  2

• Allow FASTQs to be in subfolders

  #61 opened 5 years ago by jameshadfield
  1

• Front end memory issues when reaching millions of reads.

  #66 opened 5 years ago by rambaut
  1

• Improve read lengths histogram x-axis domain

  #71 opened 5 years ago by jameshadfield
  0

• Export Reads fails when there are unprocessed FASTQs on disk

  #70 opened 5 years ago by jameshadfield
  0

• Show coverage % in barchart at top

  #67 opened 5 years ago by rambaut
  0

• No data showing when using remote browser

  #65 opened 5 years ago by Psy-Fer
  3

• RAMPART & MinKNOW Barcoding

  #63 opened 5 years ago by mattdmem
  2

• Reference heatmap needs improvement with light theme

  #62 opened 5 years ago by jameshadfield
  0

• Export reads Error

  #60 opened 5 years ago by zhuying412
  2

• Panel in UI to show currently running processing scripts

  #54 opened 5 years ago by rambaut
  2

• Keep the reference colours consistent between runs and/or have some control over reference colour.

  #56 opened 5 years ago by aineniamh
  6

• Generate reports as PDF or similar

  #47 opened 5 years ago by rambaut
  0

• Command line/config option to specify number of references shown

  #42 opened 5 years ago by rambaut
  1

• Amplicon caller in annotation script

  #50 opened 5 years ago by rambaut
  0

• If barcodeNames are specified then show the sample even if no reads are mapped

  #41 opened 5 years ago by rambaut
  1

• Jump to sample if you click on a sample name

  #48 opened 5 years ago by rambaut
  1

• Reinstate UI for barcode-sample mapping/labelling.

  #52 opened 5 years ago by rambaut
  0

• Filters panel for UI

  #51 opened 5 years ago by rambaut
  0

• Responsive design for iPads/Phones/MinION Mk1C etc touchscreen

  #49 opened 5 years ago by rambaut
  0

• Don't show coverage by reference if only one reference

  #46 opened 5 years ago by rambaut
  0

• Resizing or zooming page using cmd – +/- doesn't resize components

  #44 opened 5 years ago by rambaut
  0

• Optional reading of .bed files

  #43 opened 5 years ago by rambaut
  0

• Artifactual peak in read length histogram

  #39 opened 5 years ago by rambaut
  1

• Wrapping of sample names

  #40 opened 5 years ago by rambaut
  0

• Heatmap colour scale reversed.

  #38 opened 5 years ago by rambaut
  0

• Option to show absolute number of reference matches in heatmap

  #37 opened 5 years ago by rambaut
  0

• When a set of barcode names are specified, only those should be shown

  #36 opened 5 years ago by rambaut
  0