Pinned Repositories
alv
A console-based alignment viewer
DA3018_bst
Binary search trees
da3018_vt20
Code, data, etc for the spring semester round of DA3018
da3018_vt22_repo
dnctree
Divide and conquer a phylogenetic tree
FastPhylo
FastPhylo is software project containing the implementations of the algorithms "Fast Computation of Distance Estimators", "Fast Neighbor Joining", and more.
jprime
Probabilistic Inference of Molecular Evolution
modelestimator-v2
Infer amino-acid replacement-rate matrices from protein multi-sequence alignments. Fast!
modelmatcher
Rapid identification of evolutionary models
RefSense
arvestad's Repositories
arvestad/alv
A console-based alignment viewer
arvestad/jprime
Probabilistic Inference of Molecular Evolution
arvestad/da3018_vt22_repo
arvestad/da3018_vt20
Code, data, etc for the spring semester round of DA3018
arvestad/da3018_vt2023_repo
Course materials for spring 2023
arvestad/da3018_vt21
Code repository for DA3018 spring 2021
arvestad/dnctree
Divide and conquer a phylogenetic tree
arvestad/modelmatcher
Rapid identification of evolutionary models
arvestad/robinson_foulds
A simple command line tool for computing the Robinson-Foulds distance given two trees, using the ETE toolkit.
arvestad/snitt
Sample code for DA3018
arvestad/modelestimator-v2
Infer amino-acid replacement-rate matrices from protein multi-sequence alignments. Fast!
arvestad/ark
arvestad/arvestad.github.io
My adaption of the Github Pages template for academic personal websites, forked from academicpages/academicpages.github.io
arvestad/CI_Demo
A dummy repo to show how to use a Github actions workflow for continuous integration
arvestad/dotfiles
A way to save away my .bash_profile files etc. And other settings.
arvestad/eddie
Discord bot for managing ProgTek and similar
arvestad/exonize
arvestad/exv
Command line tool for viewing Excel files
arvestad/fast-neighborhood-correlation
Optimized implementation of Neighborhood Correlation for bioinformatics sequence analysis. This thesis project compares Python, custom C++, and Eigen C++ implementations for performance and accuracy.
arvestad/GenFamClust
Jesper Holms version of GenFamClust
arvestad/genomstromning
Analysera hur det går för våra studenter
arvestad/gpt4all
gpt4all: a chatbot trained on a massive collection of clean assistant data including code, stories and dialogue
arvestad/IGGB
Genome Browser, that takes user input to display shared genomes from Species, or homologs. A project by Danilo Catalan Canales.
arvestad/iterm_startup_config
arvestad/neighborhood_correlation
An update of Durand and Joseph's Neighborhood Correlation tool for assessing protein sequence similarity
arvestad/Olivia_evolution
arvestad/participation
Compute expected number of participants based on self-reported probability of participation.
arvestad/personnummer
Validate Swedish personal identity numbers
arvestad/snc
My version of Neighborhood Correlation sequence comparisons
arvestad/summera
Add points in exams. Using LaTeX and a macro 'poang{3}' for showing 3 points for a question, I want it to be easy to add up how many points I have added to the exam.