Pinned Repositories
alv
A console-based alignment viewer
DA3018_bst
Binary search trees
da3018_vt20
Code, data, etc for the spring semester round of DA3018
da3018_vt22_repo
dnctree
Divide and conquer a phylogenetic tree
FastPhylo
FastPhylo is software project containing the implementations of the algorithms "Fast Computation of Distance Estimators", "Fast Neighbor Joining", and more.
jprime
Probabilistic Inference of Molecular Evolution
modelestimator-v2
Infer amino-acid replacement-rate matrices from protein multi-sequence alignments. Fast!
modelmatcher
Rapid identification of evolutionary models
RefSense
arvestad's Repositories
arvestad/RefSense
arvestad/da3018_vt20
Code, data, etc for the spring semester round of DA3018
arvestad/FastPhylo
FastPhylo is software project containing the implementations of the algorithms "Fast Computation of Distance Estimators", "Fast Neighbor Joining", and more.
arvestad/DA3018_bst
Binary search trees
arvestad/modelestimator_v1
Estimate a substitution model from an alignment
arvestad/paHMM-dist
paHMM-Tree - distance-based pairwise statistical phylogenetic distance estimation using pair hidden Markov models
arvestad/accuracy_in_prime
arvestad/BESST
BESST - scaffolder for genomic assemblies
arvestad/da3018_rec_descent
Some example data for the assignment
arvestad/DA3018_vt19
Sample code etc for 2019 run of DA3018
arvestad/DRASS
arvestad/ecdc_covid19_view
Plot and view data from ECDC. You need to download their Excel data file yourself.
arvestad/facs
Fast and Accurate Classification of Sequences using Bloom filters
arvestad/GetDistr
Helps to calculate observed fragment size distribution for various bioinformatic tools
arvestad/graph_mangle
arvestad/petimeter
Tool for assessing assembly quality using full length cDNA
arvestad/PrimeTV2
A tool to visualize reconciled trees
arvestad/PrimeTV2Forweb
arvestad/seqtools
Some simple utilities
arvestad/SimSpliceEvol
SimSpliceEvol: Alternative splicing-aware simulation of biological sequence evolution
arvestad/spruce_genome_project
Set of tools to assist spurce2.0 project
arvestad/tab2table
arvestad/tree_matching_distance
An implementation of the tree distance metric suggested by Lin, Rajan, and Moret, at ISBRA 2011.
arvestad/try_git
arvestad/vrbiostat
An analysis of success rates at VR-NT 2008-2016