arzwa
Evolutionary and computational biology, currently a postdoc in the speciation group at Université de Lille.
https://eep.univ-lille.fr/en/presentation-english/
Pinned Repositories
Beluga.jl
Statistical analysis of gene family evolution using phylogenetic birth-death processes and WGD inference using rjMCMC
DeadBird.jl
Statistical analysis of comparative genomic data using phylogenetic birth-death process models
IncBetaDer
NewickTree.jl
Newick formatted (phylogenetic) trees
py-adhore
Tools for performing I-ADHoRe co-linearity inference and visualization
TaoNet
Simulate gene family syntenic networks.
TwoTypeDLModel
Inference for a two type continuous-time branching process model of gene family evolution
wgd
Python package and CLI for whole-genome duplication related analyses. This package is deprecated in favor of https://github.com/heche-psb/wgd.
Whale.jl
Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation
whaleprep
Nextflow pipeline for preparatory analyses for Whale
arzwa's Repositories
arzwa/wgd
Python package and CLI for whole-genome duplication related analyses. This package is deprecated in favor of https://github.com/heche-psb/wgd.
arzwa/Whale.jl
Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation
arzwa/Beluga.jl
Statistical analysis of gene family evolution using phylogenetic birth-death processes and WGD inference using rjMCMC
arzwa/NewickTree.jl
Newick formatted (phylogenetic) trees
arzwa/TaoNet
Simulate gene family syntenic networks.
arzwa/whaleprep
Nextflow pipeline for preparatory analyses for Whale
arzwa/py-adhore
Tools for performing I-ADHoRe co-linearity inference and visualization
arzwa/DeadBird.jl
Statistical analysis of comparative genomic data using phylogenetic birth-death process models
arzwa/TwoTypeDLModel
Inference for a two type continuous-time branching process model of gene family evolution
arzwa/IncBetaDer
arzwa/morph-bulk
Utilities and CLI for MORPH bulk runs
arzwa/AdvancedMH.jl
A Julia library for random-walk Metropolis-Hastings algorithms
arzwa/arzwa.github.io
personal website
arzwa/BayesianHClust
Bayesian hierarchical clustering (~Heller & Ghahramani)
arzwa/BioAlignments.jl
Sequence alignment tools
arzwa/DeterministicMixedPloidy
Deterministic mixed-ploidy dynamical system
arzwa/DynamicHMC.jl
Implementation of robust dynamic Hamiltonian Monte Carlo methods (NUTS) in Julia.
arzwa/EPABC.jl
Expectation-propagation approximate Bayesian computation
arzwa/homologizer
Homologizer: phasing gene copies into polyploid subgenomes
arzwa/MaereModel
Approximate Bayesian inference for the genome evolution model of Maere et al. (2005)
arzwa/MSCSimPlot
Simulate a multispecies coalescent forward in time and make a plot
arzwa/MultilocusIsland
arzwa/pandoc-templates-1
Some templates for Pandoc.
arzwa/PlotThemes.jl
Themes for the Julia plotting package Plots.jl
arzwa/PolyStab
arzwa/revbayes
Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language
arzwa/SmoothTree.jl
Bayesian estimation of conditional clade distributions etc.
arzwa/vimwiki_markdown
vimwiki markdown file to html with syntax highlighting.
arzwa/vuilbak.github.io
vuilbak website
arzwa/WrightDistribution