arzwa/wgd

Issues

• wgd syn #Run error

  #93 opened 2 months ago by YuJiang0121
  1

• wgd syn: multiplicons.txt file issue

  #65 opened 3 years ago by chrisjackson-pellicle
  1

• ksd problem

  #92 opened 6 months ago by lindonghuia
  0

• standard error of Ks from codeml

  #33 opened 3 years ago by igigkuo
  8

• No codeml results for GF_0000.....

  #91 opened 8 months ago by karthickbrlab
  0

• About input sequences

  #90 opened 9 months ago by Tang-pro
  0

• Error running dmd

  #89 opened a year ago by hyyuu
  1

• WARNING:root:No codeml results

  #88 opened a year ago by abcbot123
  1

• The align_out folder is empty

  #87 opened a year ago by ShirelyI
  0

• Alternative Ks distribution display

  #86 opened 2 years ago by romseg
  4

• Dotplots.svg and ks_anchors.tsv files are empty

  #78 opened 2 years ago by muthu1722
  9

• bokeh visualisation error

  #81 opened 2 years ago by ardy20
  2

• command "wgs ksd" work error

  #84 opened 2 years ago by Athena010
  1

• WGD run error

  #85 opened 2 years ago by majssssa
  1

• Singularity error with wgd syn

  #83 opened 2 years ago by tylerdodgeball
  2

• compute a Ks distribution error

  #51 opened 4 years ago by bigboom1
  2

• Singularity test failed

  #82 opened 2 years ago by ardy20
  0

• Stronger evidence of WGD in one species versus another

  #80 opened 2 years ago by andreaswallberg
  0

• KeyError

  #77 opened 3 years ago by FFerraro99
  5

• How to adjust the abscissa of the Ks plot?

  #76 opened 3 years ago by Dementieva521
  2

• Singularity I-ADHoRe not working

  #42 opened 4 years ago by pedrobdfp
  2

• Is the singularity installation up to date?

  #56 opened 4 years ago by smallfishcui
  3

• Hang up due to codeml and fix

  #72 opened 3 years ago by mason-linscott
  1

• Errors when using kde & mix methods

  #71 opened 3 years ago by Ziwei-Liu
  0

• enconding error

  #43 opened 4 years ago by shiyi-pan
  7

• Can I use wgd for de novo transcriptomes

  #47 opened 3 years ago by lychen83
  7

• mcl error about Not all gene pairs present

  #45 opened 3 years ago by shiyi-pan
  3

• errors in ksd step with the example dataset, newick error

  #44 opened 3 years ago by gainett
  6

• Warnings and errors during ksd analysis

  #38 opened 3 years ago by alslonik
  6

• Installation stuck at pandas wheel

  #52 opened 3 years ago by Cecilia-Sensalari
  1

• PAML installation in Singularity container

  #57 opened 3 years ago by Cecilia-Sensalari
  2

• wgd ksd output can not generate the tsv file

  #67 opened 3 years ago by ljl000
  2

• Visualization

  #70 opened 3 years ago by ardy20
  1

• number of threads

  #69 opened 3 years ago by ardy20
  1

• raise the `max_pairwise` parameter

  #68 opened 3 years ago by ardy20
  1

• Installation fail while collecting scipy>=1.2

  #62 opened 3 years ago by bshrestha0
  1

• ksd error about Generating plots and No `Omega` value of some gene pairs

  #64 opened 4 years ago by Dawei-Xia
  4

• wgd ksd error : AttributeError: type object 'object' has no attribute 'dtype'

  #63 opened 4 years ago by dongseok123
  14

• Extract CDS for WGD events

  #50 opened 4 years ago by joehagmann
  2

• *ks.svg figure is empty

  #58 opened 4 years ago by shiyi-pan
  6

• wgd ksd python error

  #55 opened 4 years ago by zxclovezby
  13

• result figures are empty

  #46 opened 4 years ago by shiyi-pan
  6

• error in plot generation in wgd ksd

  #49 opened 4 years ago by joehagmann
  2

• paranome is empty

  #41 opened 4 years ago by cintiaiha
  5

• Package not on pypi

  #40 opened 4 years ago by bedroesb
  3

• multiplicon

  #39 opened 4 years ago by alslonik
  4

• installation issue

  #37 opened 5 years ago by qiuxx221
  2

• How to change i-adhore configuration

  #35 opened 5 years ago by ShenChen-bioUtopia
  1

• why wgd can't run syn in one_v_one model?

  #36 opened 5 years ago by ShenChen-bioUtopia
  1

• Error: Invalid value for '--ks_range' / '-r'

  #34 opened 5 years ago by eocene-olig
  1