polyploidy
There are 24 repositories under polyploidy topic.
SunPengChuan/wgdi
WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes
arzwa/wgd
Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche-psb/wgd.
mmollina/MAPpoly
Genetic maps in autopolyploids
PlantandFoodResearch/MCHap
Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.
arzwa/Whale.jl
Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation
hannesbecher/shiny-k-mers
Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraploids (allo and auto)
almeidasilvaf/HybridExpress
An R package for comparative transcriptomic analyses of hybrids and their progenitors
gwct/grampa
Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis
mgaynor1/nQuack
An R package for predicting ploidal level from sequence data using site-based heterozygosity
zhangrengang/SOI
Robust identification of orthologous Synteny with the Orthology Index
lauzingaretti/pSBVB
Manual
zhangrengang/subgenome_phasing_example
An Example of Subgenome Phasing for Complex Allopolyploidy
plantarum/flowPloidy
An R package for flow cytometry histogram analysis
almeidasilvaf/doubletroubledb
A dashboard to explore and download the duplicated gene repertoire in eukaryote species
mgaynor1/AutoPop
R-based autopolyploid population and population genetic simulation
alethere/mpQTL
github repository for R package mpQTL
Genome-structure-evolution-analysis/AKRUP
AKRUP: ancestral karyotype reconstruction universal pipeline
rosemckeon/ploidy
How does disturbance on a landscape affect the establishment of new polyploid plant species?
almeidasilvaf/HybridExpress_paper
Data and code associated with the paper "HybridExpress: an R/Bioconductor package for comparative transcriptomic analyses of hybrids and their progenitors"
Glfrey/Hijacking_Sourmash
Scripts, information and data for publication in APPS.
kemcelroy/Pant_rDNAhistones
Bioinformatic methods used in McElroy et al. (2021). Asexuality associated with marked genomic expansion of tandemly repeated rRNA and histone genes. Molecular Biology and Evolution.
rlbaker5/polyploidy_networks
Script and data supporting a Brassica network analysis manuscript submitted to Applications in Plant Sciences
jnarayan81/Polyploidism
Estimate the polyploidy
szhan/inst-spec
R scripts and data files to test the "instant speciation" hypothesis