Pinned Repositories
biojava
BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of the biojava project is to facilitate rapid application development for bioinformatics.
LUI
Laser User Interface
mdscale
A free and open-source Multidimensional Scaling (MDS) library for Java.
pdbmunger
Tools for robust manipulation of PDB files
posters
Refereed posters
pyem
Python programs for electron microscopy
pyem-nb
Practical pyem through Jupyter notebooks
pyem-tomo
Possibly temporary holding place for tomography utilities based on pyem
relion-external
Programs for Relion's "External" job interface
asarnow's Repositories
asarnow/pyem
Python programs for electron microscopy
asarnow/posters
Refereed posters
asarnow/pyem-nb
Practical pyem through Jupyter notebooks
asarnow/relion-external
Programs for Relion's "External" job interface
asarnow/pdbmunger
Tools for robust manipulation of PDB files
asarnow/pyem-tomo
Possibly temporary holding place for tomography utilities based on pyem
asarnow/biojava
BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of the biojava project is to facilitate rapid application development for bioinformatics.
asarnow/cet_toolbox
asarnow/common-pubs
UCSF Physical Underpinnings of Biological Systems 2015
asarnow/cryodrgn
Neural networks for cryo-EM reconstruction
asarnow/pubs-analysis
asarnow/cwf_denoise
asarnow/init_tomo
asarnow/IntroCV
asarnow/IsoNet
Self-supervised learning for isotropic cryoET reconstruction
asarnow/jce
Structure alignment and analysis using BioJava
asarnow/nccb_website
website for Northern California Computational Biology group
asarnow/numba
NumPy aware dynamic Python compiler using LLVM
asarnow/OccuPy
asarnow/offlineimap
Read/sync your IMAP mailboxes [Python]
asarnow/ptui
Phenotypic Training User Interface
asarnow/pyem-feedstock
A conda-smithy repository for pyem.
asarnow/relion
Image-processing software for cryo-electron microscopy
asarnow/restore
A CNN for denoising cryo-EM images
asarnow/SPIDER
SPIDER (System for Processing Image Data from Electron microscopy and Related fields) is an image processing system for electron microscopy, especially usefull for single-particle reconstruction.
asarnow/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
asarnow/Theremin
Undead Mac OS X MPD Client.
asarnow/tomotwin-cryoet
cryo-ET particle picking by representation and metric learning
asarnow/warp
asarnow/whatsmyblob
Search engine for unknown cryo-EM densities