asarnow

asarnow's Stars

• wileyyugioh/zotmoov

  Zotero plugin to automatically move attachments and link them

  Language:JavaScript5936737

• storpipfugl/pykdtree

  Fast kd-tree implementation in Python

  Language:C226144646

• dask/dask-image

  Distributed image processing

  Language:Python2131415747

• 3dem/model-angelo

  Automatic atomic model building program for cryo-EM maps

  Language:Python12998820

• andrew-j-armstrong/SCFusion

  SC Fusion

  Language:C++7791823

• vmorariu/figtree

  Fast computation of Gauss transforms in multiple dimensions; enables efficient Kernel Density Estimation (KDE) with Gaussian kernels.

  Language:C++633332

• ComputationalCryoEM/ASPIRE-Python

  Algorithms for Single Particle Reconstruction

  Language:Python51752723

• czimaginginstitute/MotionCor3

  Anisotropic correction of beam induced sample motion for cryo-electron microscopy and tomography

  Language:C++463183

• czimaginginstitute/AreTomo2

  Language:C++454236

• KarenUllrich/Pytorch-Backprojection

  This code accompanies "Differentiable probabilistic models of scientific imaging with the Fourier slice theorem", UAI 2019

  Language:Jupyter Notebook374110

• olibclarke/chimerax-trimmings

  Useful aliases and startup settings for ChimeraX

  28113

• KudryashevLab/TomoBEAR

  TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram averaging.

  Language:MATLAB272156

• OPIC-Oxford/localrec

  Localized reconstruction of flexible subunits from cryo-EM images

  Language:Python161474

• PrincetonUniversity/cwf_denoise

  Covariance Estimation and Denoising for Cryo-EM Images (Covariance Wiener Filtering)

  Language:Matlab14406

• bpowell122/cryoSRPNT

  Rapidly simulate realistic cryo-EM particles

  Language:Python13101

• CellArchLab/cryoet-scripts

  Miscellaneous scripts for processing cryo-ET data

  Language:Shell12300

• scipion-em/scipion-em-tomo

  Base tomography Scipion plugin with data model definition

  Language:Python881085

• danfis/gnn

  Growing Neural Networks Library

  Language:C6201

• azazellochg/relion-external-jobs

  Python scripts for Relion external job type

  Language:Python4301

• keiserlab/metric-ion-classification

  Official repository for Metric Ion Classification (MIC) code and models

  Language:Jupyter Notebook4201

• KudryashevLab/SUSAN

  SUSAN is a sub-tomogram averaging (StA) workflow for CryoET based on sub-stacks of images instead sub-volumes of tomograms. Such an approach substantially lowers computational complexity to speed up StA processing.

  Language:C++2000

• JackTaylorBrown/massphotometry

  Language:Jupyter Notebook1

• yxhlwh/mdscale

  A free and open-source Multidimensional Scaling (MDS) library for Java.

  Language:Java130